| Exome sequencing identifies recurrent mutations of the splicing factor SF3B1 gene in chronic lymphocytic leukemia V Quesada, L Conde, N Villamor, GR Ordóñez, P Jares, L Bassaganyas, ... Nature genetics 44 (1), 47, 2012 | 991 | 2012 |
| GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information R Nogales-Cadenas, P Carmona-Saez, M Vazquez, C Vicente, X Yang, ... Nucleic acids research 37 (suppl_2), W317-W322, 2009 | 447 | 2009 |
| Pan-cancer analysis of whole genomes I The, TPCA of Whole, Genomes Consortium Nature 578 (7793), 82, 2020 | 318 | 2020 |
| Pathway and network analysis of cancer genomes P Creixell, J Reimand, S Haider, G Wu, T Shibata, M Vazquez, ... Nature methods 12 (7), 615, 2015 | 276 | 2015 |
| Recurrent inactivation of STAG2 in bladder cancer is not associated with aneuploidy C Balbás-Martínez, A Sagrera, E Carrillo-de-Santa-Pau, J Earl, ... Nature genetics 45 (12), 1464, 2013 | 237 | 2013 |
| The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text M Krallinger, M Vazquez, F Leitner, D Salgado, A Chatr-Aryamontri, ... BMC bioinformatics 12 (8), 1-31, 2011 | 161 | 2011 |
| Computational approaches to identify functional genetic variants in cancer genomes A Gonzalez-Perez, V Mustonen, B Reva, GRS Ritchie, P Creixell, ... Nature methods 10 (8), 723, 2013 | 158 | 2013 |
| CHEMDNER: The drugs and chemical names extraction challenge M Krallinger, F Leitner, O Rabal, M Vazquez, J Oyarzabal, A Valencia Journal of cheminformatics 7 (1), 1-11, 2015 | 157 | 2015 |
| The CHEMDNER corpus of chemicals and drugs and its annotation principles M Krallinger, O Rabal, F Leitner, M Vazquez, D Salgado, Z Lu, R Leaman, ... Journal of cheminformatics 7 (1), 1-17, 2015 | 144 | 2015 |
| Chimeras taking shape: potential functions of proteins encoded by chimeric RNA transcripts M Frenkel-Morgenstern, V Lacroix, I Ezkurdia, Y Levin, A Gabashvili, ... Genome research 22 (7), 1231-1242, 2012 | 128 | 2012 |
| Text mining for drugs and chemical compounds: methods, tools and applications M Vazquez, M Krallinger, F Leitner, A Valencia Molecular Informatics 30 (6‐7), 506-519, 2011 | 87 | 2011 |
| Quantification of miRNA-mRNA interactions A Muniategui, R Nogales-Cadenas, M Vázquez, XL Aranguren, X Agirre, ... PloS one 7 (2), e30766, 2012 | 75 | 2012 |
| Overview of the chemical compound and drug name recognition (CHEMDNER) task M Krallinger, F Leitner, O Rabal, M Vazquez, J Oyarzabal, A Valencia BioCreative challenge evaluation workshop 2, 2, 2013 | 65 | 2013 |
| Overview of the CHEMDNER patents task M Krallinger, O Rabal, A Lourenço, MP Perez, GP Rodriguez, M Vazquez, ... Proceedings of the fifth BioCreative challenge evaluation workshop, 63-75, 2015 | 47 | 2015 |
| bioNMF: a web-based tool for nonnegative matrix factorization in biology E Mejía-Roa, P Carmona-Saez, R Nogales, C Vicente, M Vázquez, ... Nucleic acids research 36 (suppl_2), W523-W528, 2008 | 39 | 2008 |
| Structure-PPi: a module for the annotation of cancer-related single-nucleotide variants at protein–protein interfaces M Vázquez, A Valencia, T Pons Bioinformatics 31 (14), 2397-2399, 2015 | 36 | 2015 |
| MyMiner: a web application for computer-assisted biocuration and text annotation D Salgado, M Krallinger, M Depaule, E Drula, AV Tendulkar, F Leitner, ... Bioinformatics 28 (17), 2285-2287, 2012 | 34 | 2012 |
| How to link ontologies and protein–protein interactions to literature: text-mining approaches and the BioCreative experience M Krallinger, F Leitner, M Vazquez, D Salgado, C Marcelle, M Tyers, ... Database 2012, 2012 | 31 | 2012 |
| CheNER: chemical named entity recognizer A Usié, R Alves, F Solsona, M Vázquez, A Valencia Bioinformatics 30 (7), 1039-1040, 2014 | 30 | 2014 |
| MARQ: an online tool to mine GEO for experiments with similar or opposite gene expression signatures M Vazquez, R Nogales-Cadenas, J Arroyo, P Botï¿ ½as, R Garcï¿ ½a, ... Nucleic acids research 38 (suppl_2), W228-W232, 2010 | 28 | 2010 |
Alfonso ValenciaICREA Professor. Barcelona Supercomputing Center.Verified email at bsc.es
