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Ruben Sanchez-Garcia
Ruben Sanchez-Garcia
University of Oxford (UK), Department of Statistics & XChem
Verified email at stats.ox.ac.uk
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Cited by
Cited by
Year
DeepEMhancer: a deep learning solution for cryo-EM volume post-processing
R Sanchez-Garcia, J Gomez-Blanco, A Cuervo, JM Carazo, COS Sorzano, ...
Communications Biology 4, 874, 2021
6132021
BIPSPI: a method for the prediction of partner-specific protein–protein interfaces
R Sanchez-Garcia, COS Sorzano, JM Carazo, J Segura
Bioinformatics 35 (3), 470-477, 2019
952019
Survey of the analysis of continuous conformational variability of biological macromolecules by electron microscopy
COS Sorzano, A Jiménez, J Mota, JL Vilas, D Maluenda, M Martínez, ...
Acta Crystallographica Section F: Structural Biology Communications 75 (1 …, 2019
592019
Continuous flexibility analysis of SARS-CoV-2 spike prefusion structures
R Melero, COS Sorzano, B Foster, JL Vilas, M Martínez, R Marabini, ...
IUCrJ 7 (6), 1059-1069, 2020
442020
Local computational methods to improve the interpretability and analysis of cryo-EM maps
S Kaur, J Gomez-Blanco, AAZ Khalifa, S Adinarayanan, ...
Nature communications 12 (1), 1240, 2021
422021
Deep Consensus, a deep learning-based approach for particle pruning in cryo-electron microscopy
R Sanchez-Garcia, J Segura, D Maluenda, JM Carazo, COS Sorzano
IUCrJ 5 (6), 854-865, 2018
422018
Advances in xmipp for cryo–electron microscopy: From xmipp to scipion
D Strelak, A Jiménez-Moreno, JL Vilas, E Ramírez-Aportela, ...
Molecules 26 (20), 6224, 2021
312021
MicrographCleaner: A python package for cryo-EM micrograph cleaning using deep learning
R Sanchez-Garcia, J Segura, D Maluenda, COS Sorzano, JM Carazo
Journal of structural biology 210 (3), 107498, 2020
312020
Integration of Cryo-EM Model Building Software in Scipion
M Martínez, A Jiménez-Moreno, D Maluenda, E Ramírez-Aportela, ...
Journal of Chemical Information and Modeling 60 (5), 2533-2540, 2020
252020
Algorithmic robustness to preferred orientations in single particle analysis by CryoEM
COS Sorzano, D Semchonok, SC Lin, YC Lo, JL Vilas, A Jiménez-Moreno, ...
Journal of Structural Biology 213 (1), 107695, 2021
202021
3DIANA: 3D domain interaction analysis: a toolbox for quaternary structure modeling
J Segura, R Sanchez-Garcia, D Tabas-Madrid, J Cuenca-Alba, ...
Biophysical journal 110 (4), 766-775, 2016
192016
3DBIONOTES v2. 0: a web server for the automatic annotation of macromolecular structures
J Segura, R Sanchez-Garcia, M Martinez, J Cuenca-Alba, ...
Bioinformatics 33 (22), 3655-3657, 2017
182017
On bias, variance, overfitting, gold standard and consensus in single-particle analysis by cryo-electron microscopy
COS Sorzano, A Jiménez-Moreno, D Maluenda, M Martínez, ...
Acta Crystallographica Section D: Structural Biology 78 (4), 410-423, 2022
172022
Flexible workflows for on-the-fly electron-microscopy single-particle image processing using Scipion
D Maluenda, T Majtner, P Horváth, JL Vilas, A Jiménez-Moreno, J Mota, ...
Acta Crystallographica Section D: Structural Biology 75 (10), 882-894, 2019
142019
Cryo-EM and single-particle analysis with Scipion
A Jiménez-Moreno, L del Cano, M Martínez, E Ramírez-Aportela, ...
JoVE (Journal of Visualized Experiments), e62261, 2021
112021
Image processing in Cryo-Electron Microscopy of Single Particles: the power of combining methods
COS Sorzano, A Jiménez-Moreno, D Maluenda, E Ramírez-Aportela, ...
Structural Proteomics: High-Throughput Methods, 257-289, 2021
112021
3DBIONOTES v3. 0: crossing molecular and structural biology data with genomic variations
J Segura, R Sanchez-Garcia, COS Sorzano, JM Carazo
Bioinformatics 35 (18), 3512-3513, 2019
112019
Swarm optimization as a consensus technique for Electron Microscopy Initial Volume
COS Sorzano, J Vargas, JL Vilas, A Jiménez-Moreno, J Mota, T Majtner, ...
Appl. Anal. Optim 2, 299-313, 2018
112018
Cryo-EM density maps adjustment for subtraction, consensus and sharpening
E Fernández-Giménez, M Martínez, R Sánchez-García, R Marabini, ...
Journal of Structural Biology 213 (4), 107780, 2021
82021
BIPSPI+: mining type-specific datasets of protein complexes to improve protein binding site prediction
R Sanchez-Garcia, JR Macias, COS Sorzano, JM Carazo, J Segura
Journal of Molecular Biology 434 (11), 167556, 2022
62022
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