Ignacio Arganda-Carreras

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Johannes SchindelinVerified email at wisc.edu
Albert CardonaMRC LMB and University of CambridgeVerified email at mrc-lmb.cam.ac.uk
Stephan SaalfeldHHMI Janelia Research CampusVerified email at janelia.hhmi.org
Curtis RuedenUniversity of Wisconsin-MadisonVerified email at wisc.edu
Mark Longair(Previously) Postdoctoral researcher, Institute of Neuroinformatics, Uni / ETH ZürichVerified email at longair.net
Stephan PreibischHHMI Janelia Research CampusVerified email at janelia.hhmi.org
Tobias PietzschCSBD/MPI-CBGVerified email at mpi-cbg.de
Benjamin SchmidOptical Imaging Centre ErlangenVerified email at fau.de
Kevin EliceiriRRF Walter H. Helmerich Professor Medical Physics, Biomedical Engineering, UW-MadisonVerified email at wisc.edu
Pavel TomancakResearch Group Leader at the Max Planck Institute of Molecular Cell Biology and Genetics in DresdenVerified email at mpi-cbg.de
Jean-Yves TinevezResearch engineer, Institut Pasteur, Paris, FranceVerified email at pasteur.fr
Daniel James WhiteApplications specialist, GE Healthcare, life sciencesVerified email at ge.com
H Sebastian SeungProfessor, Princeton Neuroscience Institute and Computer Science Dept.Verified email at princeton.edu
Fadi DornaikaIKERBASQUE Research FoundationVerified email at ehu.es
Carlos Ortiz de SolorzanoFull Professor - CIMA - Universidad de NavarraVerified email at unav.es
Philippe AndreyResearch Director (DR2), Institut National de la Recherche Agronomique (INRA)Verified email at inrae.fr
David LeglandINRAEVerified email at inrae.fr
Carlos Oscar S. Sorzano (ORCID:000...National Center of Biotechnology (CSIC)Verified email at cnb.csic.es
Arrate Muñoz BarrutiaFull Professor, Univ. Carlos III de Madrid; Instituto de Investigación Sanitaria Gregorio MarañónVerified email at ing.uc3m.es
Jan KybicFaculty of Electrical Engineering, Czech Technical University in PragueVerified email at fel.cvut.cz

Ignacio Arganda-Carreras

Ikerbasque Associate Researcher at University of the Basque Country and DIPC

Verified email at ehu.eus - Homepage

Machine Learning Image Processing Computer Vision Bioimage Analysis Neuroscience


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Fiji: an open-source platform for biological-image analysis J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair, T Pietzsch, ... Nature Methods 9 (7), 676–682, 2012	38448	2012
BoneJ: free and extensible bone image analysis in ImageJ M Doube, MM Kłosowski, I Arganda-Carreras, FP Cordelières, ... Bone 47 (6), 1076-1079, 2010	1789	2010
Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification I Arganda-Carreras, V Kaynig, C Rueden, KW Eliceiri, J Schindelin, ... Bioinformatics 33 (15), 2424-2426, 2017	1229	2017
TrakEM2 software for neural circuit reconstruction A Cardona, S Saalfeld, J Schindelin, I Arganda-Carreras, S Preibisch, ... PloS one 7 (6), e38011, 2012	776	2012
MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ D Legland, I Arganda-Carreras, P Andrey Bioinformatics 32 (22), 3532-3534, 2016	665	2016
Serial two-photon tomography for automated ex vivo mouse brain imaging T Ragan, LR Kadiri, KU Venkataraju, K Bahlmann, J Sutin, J Taranda, ... Nature methods 9 (3), 255-258, 2012	558	2012
3D reconstruction of histological sections: Application to mammary gland tissue I Arganda‐Carreras, R Fernández‐González, A Muñoz‐Barrutia, ... Microscopy research and technique 73 (11), 1019-1029, 2010	513	2010
Consistent and elastic registration of histological sections using vector-spline regularization I Arganda-Carreras, COS Sorzano, R Marabini, JM Carazo, ... International Workshop on Computer Vision Approaches to Medical Image …, 2006	340	2006
Crowdsourcing the creation of image segmentation algorithms for connectomics I Arganda-Carreras, SC Turaga, DR Berger, D Cireşan, A Giusti, ... Frontiers in neuroanatomy, 142, 2015	306	2015
Mapping social behavior-induced brain activation at cellular resolution in the mouse Y Kim, KU Venkataraju, K Pradhan, C Mende, J Taranda, SC Turaga, ... Cell reports 10 (2), 292-305, 2015	237	2015
Vision-Based Fall Detection with Convolutional Neural Networks A Núñez-Marcos, G Azkune, I Arganda-Carreras Wireless Communications and Mobile Computing 2017, 1-16, 2017	171	2017
Deep learning on chest X-ray images to detect and evaluate pneumonia cases at the era of COVID-19 K Hammoudi, H Benhabiles, M Melkemi, F Dornaika, I Arganda-Carreras, ... Journal of medical systems 45 (7), 1-10, 2021	103	2021
Olfactory projectome in the zebrafish forebrain revealed by genetic single-neuron labelling N Miyasaka, I Arganda-Carreras, N Wakisaka, M Masuda, U Sümbül, ... Nature communications 5 (1), 1-14, 2014	65	2014
Multicolor multiscale brain imaging with chromatic multiphoton serial microscopy L Abdeladim, KS Matho, S Clavreul, P Mahou, JM Sintes, X Solinas, ... Nature communications 10 (1), 1-14, 2019	61	2019
Identifying neuronal lineages of Drosophila by sequence analysis of axon tracts A Cardona, S Saalfeld, I Arganda-Carreras, W Pereanu, J Schindelin, ... The Journal of Neuroscience 30 (22), 7538-7553, 2010	61	2010
ANHIR: automatic non-rigid histological image registration challenge J Borovec, J Kybic, I Arganda-Carreras, DV Sorokin, G Bueno, ... IEEE transactions on medical imaging 39 (10), 3042-3052, 2020	48	2020
NucleusJ: an ImageJ plugin for quantifying 3D images of interphase nuclei A Poulet, I Arganda-Carreras, D Legland, AV Probst, P Andrey, C Tatout Bioinformatics 31 (7), 1144-1146, 2015	44	2015
A generic classification-based method for segmentation of nuclei in 3D images of early embryos J Gul-Mohammed, I Arganda-Carreras, P Andrey, V Galy, T Boudier BMC bioinformatics 15 (1), 1-12, 2014	40	2014
Phenotyping nematode feeding sites: three‐dimensional reconstruction and volumetric measurements of giant cells induced by root‐knot nematodes in Arabidopsis J Cabrera, FE Díaz‐Manzano, M Barcala, I Arganda‐Carreras, ... New Phytologist 206 (2), 868-880, 2015	38	2015
An optimized approach to perform bone histomorphometry D Malhan, M Muelke, S Rosch, AB Schaefer, F Merboth, D Weisweiler, ... Frontiers in endocrinology, 666, 2018	36	2018

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