Eric C Rouchka
Eric C Rouchka
Professor of Computer Engineering and Computer Science, University of Louisville
Verified email at louisville.edu - Homepage
Title
Cited by
Cited by
Year
Gene structure prediction and alternative splicing analysis using genomically aligned ESTs
Z Kan, EC Rouchka, WR Gish
Genome Research 11 (5), 889-900, 2001
4772001
Gibbs Recursive Sampler: finding transcription factor binding sites
W Thompson, EC Rouchka, CE Lawrence
Nucleic Acids Research 31 (13), 3580-3585, 2003
3672003
Enhancement of the gut barrier integrity by a microbial metabolite through the Nrf2 pathway
R Singh, S Chandrashekharappa, SR Bodduluri, BV Baby, B Hegde, ...
Nature communications 10 (1), 89, 2019
762019
Compute pairwise Manhattan distance and Pearson correlation coefficient of data points with GPU
DJ Chang, AH Desoky, M Ouyang, EC Rouchka
Software Engineering, Artificial Intelligences, Networking and Parallel …, 2009
692009
Inorganic Arsenic-induced cellular transformation is coupled with genome wide changes in chromatin structure, transcriptome and splicing patterns
C Riedmann, Y Ma, M Melikishvili, SG Godfrey, Z Zhang, KC Chen, ...
BMC Genomics 16 (1), 212, 2015
392015
A comparison of per sample global scaling and per gene normalization methods for differential expression analysis of RNA-seq data.
X Li, GN Brock, EC Rouchka, NGF Cooper, D Wu, TE O'Toole, RS Gill, ...
PloS one 12 (5), e0176185, 2017
382017
Involvement of PARP1 in the regulation of alternative splicing
E Matveeva, J Maiorano, Q Zhang, AM Eteleeb, P Convertini, J Chen, ...
Cell Discovery 2, 15046, 2016
362016
Prenatal Arsenic Exposure Alters Gene Expression in the Adult Liver to a Proinflammatory State Contributing to Accelerated Atherosclerosis
AV Singh, TB Knudsen, EC Rouchka, NO Ngalame, GE Arteel, Y Piao, ...
PloS one 7 (6), e38713, 2012
342012
rMAPS: RNA map analysis and plotting server for alternative exon regulation
JW Park, S Jung, EC Rouchka, YT Tseng, Y Xing
Nucleic acids research 44 (W1), W333-W338, 2016
332016
DNA motif detection using particle swarm optimization and expectation-maximization
CT Hardin, EC Rouchka
Proceedings 2005 IEEE Swarm Intelligence Symposium, 2005. SIS 2005., 181-184, 2005
322005
Current Trends in Pseudogene Detection and Characterization
EC Rouchka, IE Cha
Current Bioinformatics 4 (2), 112-119, 2009
292009
Genome-Wide Profiling of PARP1 Reveals an Interplay with Gene Regulatory Regions and DNA Methylation
N Nalabothula, T Al-jumaily, AM Eteleeb, RM Flight, S Xiaorong, ...
PloS one 10 (8), e0135410, 2015
282015
MPrime: efficient large scale multiple primer and oligonucleotide design for customized gene microarrays
EC Rouchka, A Khalyfa, NGF Cooper
BMC bioinformatics 6 (1), 175, 2005
252005
categoryCompare, an analytical tool based on feature annotations
RM Flight, BJ Harrison, F Mohammad, MB Bunge, LDF Moon, ...
Frontiers in genetics 5, 2014
242014
Transcriptome-wide identification of the RNA-binding landscape of the chromatin-associated protein PARP1 reveals functions in RNA biogenesis
M Melikishvili, JH Chariker, EC Rouchka, YN Fondufe-Mittendorf
Cell Discovery 3, 17043, 2017
232017
Nuclear respiratory factor-1 and bioenergetics in tamoxifen-resistant breast cancer cells
BN Radde, MM Ivanova, HX Mai, N Alizadeh-Rad, K Piell, P Van Hoose, ...
Experimental Cell Research 347 (1), 222-231, 2016
232016
A less‐biased analysis of metalloproteins reveals novel zinc coordination geometries
S Yao, RM Flight, EC Rouchka, HNB Moseley
Proteins: Structure, Function, and Bioinformatics 83 (8), 1470-1487, 2015
222015
Identification of a plasma metabolomic signature of thrombotic myocardial infarction that is distinct from non-thrombotic myocardial infarction and stable coronary artery disease
AP DeFilippis, PJ Trainor, BG Hill, AR Amraotkar, SN Rai, GA Hirsch, ...
PloS one 12 (4), e0175591, 2017
202017
Effect of single nucleotide polymorphisms on Affymetrix (R) match-mismatch probe pairs
EC Rouchka, AW Phatak, AV Singh
Bioinformation 2 (9), 405-411, 2008
202008
Identification of successful mentoring communities using network-based analysis of mentor-mentee relationships across Nobel laureates
JH Chariker, Y Zhang, JR Pani, EC Rouchka
Scientometrics 111 (3), 1733-1749, 2017
192017
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