Eric C Rouchka
Eric C Rouchka
Professor of Computer Science and Engineering, University of Louisville
Verified email at louisville.edu - Homepage
Title
Cited by
Cited by
Year
Gene structure prediction and alternative splicing analysis using genomically aligned ESTs
Z Kan, EC Rouchka, WR Gish
Genome Research 11 (5), 889-900, 2001
4852001
Gibbs Recursive Sampler: finding transcription factor binding sites
W Thompson, EC Rouchka, CE Lawrence
Nucleic Acids Research 31 (13), 3580-3585, 2003
3822003
Enhancement of the gut barrier integrity by a microbial metabolite through the Nrf2 pathway
R Singh, S Chandrashekharappa, SR Bodduluri, BV Baby, B Hegde, ...
Nature communications 10 (1), 89, 2019
1282019
Compute pairwise Manhattan distance and Pearson correlation coefficient of data points with GPU
DJ Chang, AH Desoky, M Ouyang, EC Rouchka
Software Engineering, Artificial Intelligences, Networking and Parallel …, 2009
722009
A comparison of per sample global scaling and per gene normalization methods for differential expression analysis of RNA-seq data.
X Li, GN Brock, EC Rouchka, NGF Cooper, D Wu, TE O'Toole, RS Gill, ...
PloS one 12 (5), e0176185, 2017
422017
Involvement of PARP1 in the regulation of alternative splicing
E Matveeva, J Maiorano, Q Zhang, AM Eteleeb, P Convertini, J Chen, ...
Cell Discovery 2, 15046, 2016
422016
Inorganic Arsenic-induced cellular transformation is coupled with genome wide changes in chromatin structure, transcriptome and splicing patterns
C Riedmann, Y Ma, M Melikishvili, SG Godfrey, Z Zhang, KC Chen, ...
BMC Genomics 16 (1), 212, 2015
392015
rMAPS: RNA map analysis and plotting server for alternative exon regulation
JW Park, S Jung, EC Rouchka, YT Tseng, Y Xing
Nucleic acids research 44 (W1), W333-W338, 2016
372016
Prenatal Arsenic Exposure Alters Gene Expression in the Adult Liver to a Proinflammatory State Contributing to Accelerated Atherosclerosis
AV Singh, TB Knudsen, EC Rouchka, NO Ngalame, GE Arteel, Y Piao, ...
PloS one 7 (6), e38713, 2012
352012
DNA motif detection using particle swarm optimization and expectation-maximization
CT Hardin, EC Rouchka
Proceedings 2005 IEEE Swarm Intelligence Symposium, 2005. SIS 2005., 181-184, 2005
322005
Genome-Wide Profiling of PARP1 Reveals an Interplay with Gene Regulatory Regions and DNA Methylation
N Nalabothula, T Al-jumaily, AM Eteleeb, RM Flight, S Xiaorong, ...
PloS one 10 (8), e0135410, 2015
312015
Current Trends in Pseudogene Detection and Characterization
EC Rouchka, IE Cha
Current Bioinformatics 4 (2), 112-119, 2009
292009
A Critical Role of the IL-1β–IL-1R Signaling Pathway in Skin Inflammation and Psoriasis Pathogenesis
Y Cai, F Xue, C Quan, M Qu, N Liu, Y Zhang, C Fleming, X Hu, H Zhang, ...
Journal of Investigative Dermatology 139 (1), 146-156, 2019
272019
Transcriptome-wide identification of the RNA-binding landscape of the chromatin-associated protein PARP1 reveals functions in RNA biogenesis
M Melikishvili, JH Chariker, EC Rouchka, YN Fondufe-Mittendorf
Cell Discovery 3, 17043, 2017
262017
Nuclear respiratory factor-1 and bioenergetics in tamoxifen-resistant breast cancer cells
BN Radde, MM Ivanova, HX Mai, N Alizadeh-Rad, K Piell, P Van Hoose, ...
Experimental Cell Research 347 (1), 222-231, 2016
262016
Dietary copper-fructose interactions alter gut microbial activity in male rats
M Song, X Li, X Zhang, H Shi, MB Vos, X Wei, Y Wang, H Gao, ...
American Journal of Physiology-Gastrointestinal and Liver Physiology 314 (1 …, 2017
252017
categoryCompare, an analytical tool based on feature annotations
RM Flight, BJ Harrison, F Mohammad, MB Bunge, LDF Moon, ...
Frontiers in genetics 5, 2014
252014
MPrime: efficient large scale multiple primer and oligonucleotide design for customized gene microarrays
EC Rouchka, A Khalyfa, NGF Cooper
BMC bioinformatics 6 (1), 175, 2005
252005
Proceedings of the Fourteenth Annual UT-KBRIN Bioinformatics Summit 2015
EC Rouchka, JH Chariker, BJ Harrison
BMC Bioinformatics 16 (Suppl 15), I1, 2015
24*2015
Identification of a plasma metabolomic signature of thrombotic myocardial infarction that is distinct from non-thrombotic myocardial infarction and stable coronary artery disease
AP DeFilippis, PJ Trainor, BG Hill, AR Amraotkar, SN Rai, GA Hirsch, ...
PloS one 12 (4), e0175591, 2017
222017
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