Joaquin Dopazo

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David MontanerGenomics England - 100K Genomes ProjectVerified email at genomicsengland.co.uk
Ignacio MedinaUniversity of CambridgeVerified email at cam.ac.uk
Francisco García-GarcíaResearcher at the Prince Felipe Research Centre (CIPF)Verified email at cipf.es
Jose Carbonell CaballeroVerified email at cipf.es
Pablo MinguezResearcher & Head of Bioinformatics Unit - IIS Fundación Jiménez Díaz (Madrid, Spain)Verified email at quironsalud.es
Javier Santoyo-LopezEdinburgh GenomicsVerified email at ed.ac.uk
Jaime Huerta-CepasGroup Leader at CBGP (UPM-INIA), Madrid, SpainVerified email at embl.de
Hernan DopazoProfessor of evolutionary and population genomicsVerified email at ege.fcen.uba.ar
Alfonso ValenciaICREA Professor. Barcelona Supercomputing Center.Verified email at bsc.es
Alicia AmadozIgenomix SLVerified email at igenomix.com
Marta BledaComputational Biologyst, Genomics England, UKVerified email at cam.ac.uk
Luz Garcia-AlonsoPrincipal Bioinformatician at Wellcome Sanger InstituteVerified email at sanger.ac.uk
Toni GabaldonGroup Leader, Institute for Research in Biomedicine (IRB) and Barcelona Supercomputing Centre (BSC)Verified email at crg.es
Leonardo ArbizaCornell UniversityVerified email at cornell.edu
Enrique VidalPost Doctoral Researcher, Centre de Regulacio Genomica, UPF, BarcelonaVerified email at crg.eu
Maria J. MartinEuropean Bioinformatics InstituteVerified email at ebi.ac.uk
Joan Anton Puig Butille, PhdHead of Molecular Biology CORE laboratory, Hospital Clinic BarcelonaVerified email at clinic.cat
Francisco AzuajeGenomics EnglandVerified email at genomicsengland.co.uk
Enrique S. Quintana-OrtíUniversitat Politècnica de València, SpainVerified email at disca.upv.es
Marc A. Marti-RenomICREA Research Professor @ CNAG-CRGVerified email at cnag.crg.eu

Joaquin Dopazo

Head of the Clinical Bioinformatics Area, FPS, Hospital Virgen del Rocio, Sevilla, Spain

Verified email at juntadeandalucia.es - Homepage

Genomics Systems medicine Precision Medicine Clinical bioinformatics systems biology


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High-throughput functional annotation and data mining with the Blast2GO suite S Götz, JM García-Gómez, J Terol, TD Williams, SH Nagaraj, MJ Nueda, ... Nucleic acids research 36 (10), 3420-3435, 2008	3041	2008
Differential expression in RNA-seq: a matter of depth S Tarazona, F García-Alcalde, J Dopazo, A Ferrer, A Conesa Genome research 21 (12), 2213-2223, 2011	1308	2011
FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes F Al-Shahrour, R Díaz-Uriarte, J Dopazo Bioinformatics 20 (4), 578-580, 2004	1295	2004
A hierarchical unsupervised growing neural network for clustering gene expression patterns J Herrero, A Valencia, J Dopazo Bioinformatics 17 (2), 126, 2001	761	2001
The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models. L Shi, G Campbell, WD Jones, F Campagne, Z Wen, SJ Walker, Z Su, ... Nature biotechnology 28 (8), 827-838, 2010	616	2010
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium SEQC Consortium Nature biotechnology 32 (9), 903, 2014	611	2014
Changes in the pattern of DNA methylation associate with twin discordance in systemic lupus erythematosus BM Javierre, AF Fernandez, J Richter, F Al-Shahrour, JI Martin-Subero, ... Genome research 20 (2), 170-179, 2010	599	2010
Qualimap: evaluating next-generation sequencing alignment data F García-Alcalde, K Okonechnikov, J Carbonell, LM Cruz, S Götz, ... Bioinformatics 28 (20), 2678-2679, 2012	572	2012
ETE: a python Environment for Tree Exploration J Huerta-Cepas, J Dopazo, T Gabaldón BMC bioinformatics 11 (1), 1-7, 2010	398	2010
Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling I Medina, J Carbonell, L Pulido, SC Madeira, S Goetz, A Conesa, ... Nucleic acids research 38 (suppl_2), W210-W213, 2010	358	2010
Initial genomics of the human nucleolus A Németh, A Conesa, J Santoyo-Lopez, I Medina, D Montaner, B Péterfia, ... PLoS genetics 6 (3), e1000889, 2010	338	2010
Differential lipid partitioning between adipocytes and tissue macrophages modulates macrophage lipotoxicity and M2/M1 polarization in obese mice X Prieur, CYL Mok, VR Velagapudi, V Núñez, L Fuentes, D Montaner, ... Diabetes 60 (3), 797-809, 2011	332	2011
BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments F Al-Shahrour, P Minguez, J Tárraga, D Montaner, E Alloza, ... Nucleic acids research 34 (suppl_2), W472-W476, 2006	320	2006
FatiGO+: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments F Al-Shahrour, P Minguez, J Tárraga, I Medina, E Alloza, D Montaner, ... Nucleic acids research 35 (suppl_2), W91-W96, 2007	302	2007
BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments F Al-Shahrour, P Minguez, JM Vaquerizas, L Conde, J Dopazo Nucleic acids research 33 (suppl_2), W460-W464, 2005	299	2005
Genomics of the origin and evolution of Citrus GA Wu, J Terol, V Ibanez, A López-García, E Pérez-Román, C Borredá, ... Nature 554 (7692), 311-316, 2018	281	2018
PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes L Conde, JM Vaquerizas, H Dopazo, L Arbiza, J Reumers, F Rousseau, ... Nucleic acids research 34 (suppl_2), W621-W625, 2006	256	2006
Phylogenetic reconstruction using an unsupervised growing neural network that adopts the topology of a phylogenetic tree J Dopazo, JM Carazo Journal of molecular evolution 44 (2), 226-233, 1997	256	1997
GEPAS: a web-based resource for microarray gene expression data analysis J Herrero, F Al-Shahrour, R Diaz-Uriarte, A Mateos, JM Vaquerizas, ... Nucleic acids research 31 (13), 3461-3467, 2003	231	2003
Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ... Nature methods 12 (7), 623-630, 2015	230	2015

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