A mammalian microRNA expression atlas based on small RNA library sequencing P Landgraf, M Rusu, R Sheridan, A Sewer, N Iovino, A Aravin, S Pfeffer, ... Cell 129 (7), 1401-1414, 2007 | 4472 | 2007 |
Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus ND Fedorova, N Khaldi, VS Joardar, R Maiti, P Amedeo, MJ Anderson, ... PLoS genetics 4 (4), e1000046, 2008 | 580 | 2008 |
PanOCT: automated clustering of orthologs using conserved gene neighborhood for pan-genomic analysis of bacterial strains and closely related species DE Fouts, L Brinkac, E Beck, J Inman, G Sutton Nucleic acids research 40 (22), e172-e172, 2012 | 229 | 2012 |
Host genetic control of the oral microbiome in health and disease A Gomez, JL Espinoza, DM Harkins, P Leong, R Saffery, M Bockmann, ... Cell host & microbe 22 (3), 269-278. e3, 2017 | 205 | 2017 |
A new strategy to amplify degraded RNA from small tissue samples for microarray studies CC Xiang, M Chen, L Ma, QN Phan, JM Inman, OA Kozhich, ... Nucleic acids research 31 (9), e53-e53, 2003 | 121 | 2003 |
Ergatis: a web interface and scalable software system for bioinformatics workflows J Orvis, J Crabtree, K Galens, A Gussman, JM Inman, E Lee, S Nampally, ... Bioinformatics 26 (12), 1488-1492, 2010 | 119 | 2010 |
Comparative genome analysis of 19 Ureaplasma urealyticum and Ureaplasma parvumstrains V Paralanov, J Lu, LB Duffy, DM Crabb, S Shrivastava, BA Methé, J Inman, ... BMC microbiology 12, 1-20, 2012 | 109 | 2012 |
Amine-modified random primers to label probes for DNA microarrays CC Xiang, OA Kozhich, M Chen, JM Inman, QN Phan, Y Chen, ... Nature biotechnology 20 (7), 738-742, 2002 | 99 | 2002 |
Supragingival plaque microbiome ecology and functional potential in the context of health and disease JL Espinoza, DM Harkins, M Torralba, A Gomez, SK Highlander, ... MBio 9 (6), 10.1128/mbio. 01631-18, 2018 | 71 | 2018 |
The Viral MetaGenome Annotation Pipeline (VMGAP): an automated tool for the functional annotation of viral Metagenomic shotgun sequencing data HA Lorenzi, J Hoover, J Inman, T Safford, S Murphy, L Kagan, ... Standards in genomic sciences 4, 418-429, 2011 | 65 | 2011 |
Gene expression profiling of human placentas from preeclamptic and normotensive pregnancies SR Hansson, Y Chen, J Brodszki, M Chen, E Hernandez-Andrade, ... Molecular human reproduction 12 (3), 169-179, 2006 | 65 | 2006 |
Genetic and phenotypic diversity in Burkholderia: contributions by prophage and phage-like elements CM Ronning, L Losada, L Brinkac, J Inman, RL Ulrich, M Schell, ... BMC microbiology 10, 1-17, 2010 | 63 | 2010 |
Probe generation directly from small numbers of cells for DNA microarray studies CC Xiang, M Chen, OA Kozhich, QN Phan, JM Inman, Y Chen, ... Biotechniques 34 (2), 386-393, 2003 | 33 | 2003 |
Pathema: a clade-specific bioinformatics resource center for pathogen research LM Brinkac, T Davidsen, E Beck, A Ganapathy, E Caler, RJ Dodson, ... Nucleic acids research 38 (suppl_1), D408-D414, 2010 | 22 | 2010 |
PanACEA: a bioinformatics tool for the exploration and visualization of bacterial pan-chromosomes TH Clarke, LM Brinkac, JM Inman, G Sutton, DE Fouts BMC bioinformatics 19, 1-6, 2018 | 19 | 2018 |
Sensitive and specific method for detecting G protein–coupled receptor mRNAs A Hansen, Y Chen, JM Inman, QN Phan, ZQ Qi, CC Xiang, M Palkovits, ... Nature methods 4 (1), 35-37, 2007 | 19 | 2007 |
Large-scale comparative analysis of microbial pan-genomes using PanOCT JM Inman, GG Sutton, E Beck, LM Brinkac, TH Clarke, DE Fouts Bioinformatics 35 (6), 1049-1050, 2019 | 16 | 2019 |
LOCUST: a custom sequence locus typer for classifying microbial isolates LM Brinkac, E Beck, J Inman, P Venepally, DE Fouts, G Sutton Bioinformatics 33 (11), 1725-1726, 2017 | 15 | 2017 |
Scalable generation of sensory neurons from human pluripotent stem cells T Deng, VM Jovanovic, CA Tristan, C Weber, PH Chu, J Inman, S Ryu, ... Stem Cell Reports 18 (4), 1030-1047, 2023 | 13 | 2023 |
Supragingival plaque microbiome ecology and functional potential in the context of health and disease. mBio 9: e01631-18 JL Espinoza, DM Harkins, M Torralba, A Gomez, SK Highlander, ... | 6 | 2018 |