| Large-scale prediction of binding affinity in protein–small ligand complexes: The PRODIGY-LIG web server A Vangone, J Schaarschmidt, P Koukos, C Geng, N Citro, ME Trellet, ... Bioinformatics 35 (9), 1585-1587, 2019 | 148 | 2019 |
| Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019 | 115 | 2019 |
| Performance of HADDOCK and a simple contact-based protein–ligand binding affinity predictor in the D3R Grand Challenge 2 Z Kurkcuoglu, PI Koukos, N Citro, ME Trellet, J Rodrigues, IS Moreira, ... Journal of computer-aided molecular design 32, 175-185, 2018 | 115 | 2018 |
| Finding the ΔΔG spot: Are predictors of binding affinity changes upon mutations in protein–protein interactions ready for it? C Geng, LC Xue, J Roel‐Touris, AMJJ Bonvin Wiley Interdisciplinary Reviews: Computational Molecular Science 9 (5), e1410, 2019 | 100 | 2019 |
| iSEE: Interface Structure, Evolution and Energy-based machine learning predictor of binding affinity changes upon mutations C Geng, A Vangone, GE Folkers, LC Xue, AMJJ Bonvin Proteins: Structure, Function, and Bioinformatics, 2018 | 75 | 2018 |
| DeepRank: a deep learning framework for data mining 3D protein-protein interfaces N Renaud, C Geng, S Georgievska, F Ambrosetti, L Ridder, DF Marzella, ... Nature communications 12 (1), 7068, 2021 | 72 | 2021 |
| iScore: a novel graph kernel-based function for scoring protein–protein docking models C Geng, Y Jung, N Renaud, V Honavar, AMJJ Bonvin, LC Xue Bioinformatics 36 (1), 112-121, 2020 | 63 | 2020 |
| Sense and simplicity in HADDOCK scoring: Lessons from CASP‐CAPRI round 1 A Vangone, J Rodrigues, LC Xue, GCP van Zundert, C Geng, ... Proteins: Structure, Function, and Bioinformatics 85 (3), 417-423, 2017 | 54 | 2017 |
| matchms-processing and similarity evaluation of mass spectrometry data F Huber, S Verhoeven, C Meijer, H Spreeuw, EMV Castilla, C Geng, ... bioRxiv, 2020.08. 06.239244, 2020 | 40 | 2020 |
| Information-driven, ensemble flexible peptide docking using HADDOCK C Geng, S Narasimhan, JP Rodrigues, AMJJ Bonvin Modeling Peptide-Protein Interactions: Methods and Protocols, 109-138, 2017 | 36 | 2017 |
| Exploring the interplay between experimental methods and the performance of predictors of binding affinity change upon mutations in protein complexes C Geng, A Vangone, AMJJ Bonvin Protein Engineering, Design and Selection 29 (8), 291-299, 2016 | 29 | 2016 |
| Modeling peptide-protein interactions O Schueler-Furman, N London, Schueler-Furman Springer Science+ Business Media LLC, 2017 | 19 | 2017 |
| An overview of data‐driven HADDOCK strategies in CAPRI rounds 38‐45 PI Koukos, J Roel‐Touris, F Ambrosetti, C Geng, J Schaarschmidt, ... Proteins: Structure, Function, and Bioinformatics 88 (8), 1029-1036, 2020 | 11 | 2020 |
| The pdb2sql python package: parsing, manipulation and analysis of PDB files using SQL queries N Renaud, C Geng Journal of Open Source Software 5 (49), 2077, 2020 | 6 | 2020 |
| iScore: An MPI supported software for ranking protein–protein docking models based on a random walk graph kernel and support vector machines N Renaud, Y Jung, V Honavar, C Geng, AMJJ Bonvin, LC Xue SoftwareX 11, 100462, 2020 | 4 | 2020 |
| MetaScore: a novel machine-learning-based approach to improve traditional scoring functions for scoring protein–protein docking conformations Y Jung, C Geng, AMJJ Bonvin, LC Xue, VG Honavar Biomolecules 13 (1), 121, 2023 | 3 | 2023 |
| Reusable virtual coach for smoking cessation and physical activity coaching W Baccinelli, S Van Der Burg, R Richardson, D Smits, C Geng, L Ridder, ... Proceedings of the 22nd ACM International Conference on Intelligent Virtual …, 2022 | 1 | 2022 |
| Using Deep learning to personalize stroke rehabilitation S David, S Georgievska, C Geng, Y Liu, M Punt International Society of Biomechanics, 2023 | | 2023 |
| Deep-learning enhancement of large scale numerical simulations C van Leeuwen, D Podareanu, V Codreanu, MX Cai, A Berg, SP Zwart, ... arXiv preprint arXiv:2004.03454, 2020 | | 2020 |
| How Processive Enzymes Work: the Application of Molecular Dynamics Simulation to Study the Catalytic Mechanism B HUANG, G CunLiang, PAN LongQiang, W LuShan, DJ ZHANG, ... SCIENTIA SINICA Vitae 42 (8), 603-612, 2012 | | 2012 |
Alexandre M.J.J. BonvinUtrecht universityVerified email at uu.nl
