Clément Frainay
Clément Frainay
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Hypoxia induces VEGF-C expression in metastatic tumor cells via a HIF-1α-independent translation-mediated mechanism
F Morfoisse, A Kuchnio, C Frainay, A Gomez-Brouchet, MB Delisle, ...
Cell reports 6 (1), 155-167, 2014
MetExplore: collaborative edition and exploration of metabolic networks
L Cottret, C Frainay, M Chazalviel, F Cabanettes, Y Gloaguen, ...
Nucleic Acids Research, gky301, 2018
Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis
C Wieder, C Frainay, N Poupin, P Rodríguez-Mier, F Vinson, J Cooke, ...
PLoS computational biology 17 (9), e1009105, 2021
Machine learning to identify pairwise interactions between specific IgE antibodies and their association with asthma: A cross-sectional analysis within a population-based birth …
S Fontanella, C Frainay, CS Murray, A Simpson, A Custovic
PLoS medicine 15 (11), e1002691, 2018
Computational methods to identify metabolic sub-networks based on metabolomic profiles
C Frainay, F Jourdan
Briefings in bioinformatics 18 (1), 43-56, 2017
Mind the gap: mapping mass spectral databases in genome-scale metabolic networks reveals poorly covered areas
C Frainay, EL Schymanski, S Neumann, B Merlet, RM Salek, F Jourdan, ...
Metabolites 8 (3), 51, 2018
Integrated transcriptomics and metabolomics reveal signatures of lipid metabolism dysregulation in HepaRG liver cells exposed to PCB 126
R Mesnage, M Biserni, S Balu, C Frainay, N Poupin, F Jourdan, ...
Archives of Toxicology 92, 2533-2547, 2018
MetExploreViz: web component for interactive metabolic network visualization
M Chazalviel, C Frainay, N Poupin, F Vinson, B Merlet, Y Gloaguen, ...
Bioinformatics 34 (2), 312-313, 2018
Networks and graphs discovery in metabolomics data analysis and interpretation
A Amara, C Frainay, F Jourdan, T Naake, S Neumann, ...
Frontiers in Molecular Biosciences 9, 841373, 2022
Classification of pediatric asthma: from phenotype discovery to clinical practice
C Oksel, S Haider, S Fontanella, C Frainay, A Custovic
Frontiers in Pediatrics 6, 258, 2018
MetaboRank: network-based recommendation system to interpret and enrich metabolomics results
C Frainay, S Aros, M Chazalviel, T Garcia, F Vinson, N Weiss, B Colsch, ...
Bioinformatics 35 (2), 274-283, 2019
FORUM: building a Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases
M Delmas, O Filangi, N Paulhe, F Vinson, C Duperier, W Garrier, ...
Bioinformatics 37 (21), 3896-3904, 2021
A computational solution to automatically map metabolite libraries in the context of genome scale metabolic networks
B Merlet, N Paulhe, F Vinson, C Frainay, M Chazalviel, N Poupin, ...
Frontiers in Molecular Biosciences 3, 2, 2016
Targeted versus untargeted omics—the CAFSA story
M del Mar Amador, B Colsch, F Lamari, C Jardel, F Ichou, A Rastetter, ...
Journal of Inherited Metabolic Disease 41, 447-456, 2018
Large-Scale Modeling Approach Reveals Functional Metabolic Shifts during Hepatic Differentiation
N Poupin, A Corlu, NJ Cabaton, H Dubois-Pot-Schneider, C Canlet, ...
Journal of proteome research 18 (1), 204-216, 2018
Atopic dermatitis or eczema? Consequences of ambiguity in disease name for biomedical literature mining
C Frainay, Y Pitarch, S Filippi, M Evangelou, A Custovic
Clinical & Experimental Allergy 51 (9), 1185-1194, 2021
Mind the gap: mapping mass spectral databases in genomescale metabolic networks reveals poorly covered areas. Metabolites. 2018; 8: 51
C Frainay, E Schymanski, S Neumann, B Merlet, R Salek, F Jourdan, ...
Avoiding the misuse of pathway analysis tools in environmental metabolomics
C Wieder, JG Bundy, C Frainay, N Poupin, P Rodríguez-Mier, F Vinson, ...
Environmental Science & Technology 56 (20), 14219-14222, 2022
Plant genome-scale metabolic networks
L Gerlin, C Frainay, F Jourdan, C Baroukh, S Prigent
Advances in Botanical Research 98, 237-270, 2021
Pathway analysis in metabolomics: pitfalls and best practice for the use of over-representation analysis
C Wieder, C Frainay, N Poupin, P Rodríguez-Mier, F Vinson, J Cooke, ...
bioRxiv, 2021.05. 24.445406, 2021
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