| Specificity of ARGONAUTE7-miR390 interaction and dual functionality in TAS3 trans-acting siRNA formation TA Montgomery, MD Howell, JT Cuperus, D Li, JE Hansen, AL Alexander, ... Cell 133 (1), 128-141, 2008 | 883 | 2008 |
| Evolution and Functional Diversification of MIRNA Genes JT Cuperus, N Fahlgren, JC Carrington The Plant Cell 23 (2), 431-442, 2011 | 806 | 2011 |
| Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis JT Cuperus, A Carbonell, N Fahlgren, H Garcia-Ruiz, RT Burke, A Takeda, ... Nature structural & molecular biology 17 (8), 997-1003, 2010 | 475 | 2010 |
| Functional Analysis of Three Arabidopsis ARGONAUTES Using Slicer-Defective Mutants A Carbonell, N Fahlgren, H Garcia-Ruiz, KB Gilbert, TA Montgomery, ... The Plant Cell 24 (9), 3613-3629, 2012 | 298 | 2012 |
| Dynamics of Gene Expression in Single Root Cells of Arabidopsis thaliana K Jean-Baptiste, JL McFaline-Figueroa, CM Alexandre, MW Dorrity, ... The plant cell 31 (5), 993-1011, 2019 | 294 | 2019 |
| Deep learning of the regulatory grammar of yeast 5′ untranslated regions from 500,000 random sequences JT Cuperus, B Groves, A Kuchina, AB Rosenberg, N Jojic, S Fields, ... Genome research 27 (12), 2015-2024, 2017 | 198 | 2017 |
| Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing JT Cuperus, TA Montgomery, N Fahlgren, RT Burke, T Townsend, ... Proceedings of the National Academy of Sciences 107 (1), 466-471, 2010 | 165 | 2010 |
| IMPa-4, an Arabidopsis Importin α Isoform, Is Preferentially Involved in Agrobacterium-Mediated Plant Transformation S Bhattacharjee, LY Lee, H Oltmanns, H Cao, null Veena, J Cuperus, ... The Plant Cell 20 (10), 2661-2680, 2008 | 154 | 2008 |
| New generation of artificial MicroRNA and synthetic trans-acting small interfering RNA vectors for efficient gene silencing in Arabidopsis A Carbonell, A Takeda, N Fahlgren, SC Johnson, JT Cuperus, ... Plant physiology 165 (1), 15-29, 2014 | 149 | 2014 |
| Regulation and functional specialization of small RNA–target nodes during plant development I Rubio-Somoza, JT Cuperus, D Weigel, JC Carrington Current opinion in plant biology 12 (5), 622-627, 2009 | 130 | 2009 |
| The regulatory landscape of Arabidopsis thaliana roots at single-cell resolution MW Dorrity, CM Alexandre, MO Hamm, AL Vigil, S Fields, C Queitsch, ... Nature communications 12 (1), 3334, 2021 | 100 | 2021 |
| Synthetic promoter designs enabled by a comprehensive analysis of plant core promoters T Jores, J Tonnies, T Wrightsman, ES Buckler, JT Cuperus, S Fields, ... Nature Plants 7 (6), 842-855, 2021 | 93 | 2021 |
| A single-cell view of the transcriptome during lateral root initiation in Arabidopsis thaliana HP Gala, A Lanctot, K Jean-Baptiste, S Guiziou, JC Chu, JE Zemke, ... The Plant Cell 33 (7), 2197-2220, 2021 | 87 | 2021 |
| Identification of genes required for de novo DNA methylation in Arabidopsis MVC Greenberg, I Ausin, SWL Chan, SJ Cokus, JT Cuperus, S Feng, ... Epigenetics 6 (3), 344-354, 2011 | 87 | 2011 |
| Phytophthora have distinct endogenous small RNA populations that include short interfering and microRNAs N Fahlgren, SR Bollmann, KD Kasschau, JT Cuperus, CM Press, ... PLoS One 8 (10), e77181, 2013 | 72 | 2013 |
| Agrobacterium rhizogenes GALLS Protein Substitutes for Agrobacterium tumefaciens Single-Stranded DNA-Binding Protein VirE2 LD Hodges, J Cuperus, W Ream Journal of bacteriology 186 (10), 3065-3077, 2004 | 66 | 2004 |
| Identification of plant enhancers and their constituent elements by STARR-seq in tobacco leaves T Jores, J Tonnies, MW Dorrity, JT Cuperus, S Fields, C Queitsch The Plant Cell 32 (7), 2120-2131, 2020 | 58 | 2020 |
| Translation Start Sequences Affect the Efficiency of Silencing of Agrobacterium tumefaciens T-DNA Oncogenes H Lee, JL Humann, JS Pitrak, JT Cuperus, TD Parks, CA Whistler, ... Plant physiology 133 (3), 966-977, 2003 | 43 | 2003 |
| Complex Relationships between Chromatin Accessibility, Sequence Divergence, and Gene Expression in Arabidopsis thaliana CM Alexandre, JR Urton, K Jean-Baptiste, J Huddleston, MW Dorrity, ... Molecular Biology and Evolution 35 (4), 837-854, 2018 | 35 | 2018 |
| Single-cell genomics in plants: current state, future directions, and hurdles to overcome JT Cuperus Plant Physiology 188 (2), 749-755, 2022 | 31 | 2022 |
James C. CarringtonDonald Danforth Plant Science CenterVerified email at danforthcenter.org
