Josh T Cuperus
Josh T Cuperus
Research Assistant Professor, University of Washington, Genome Sciences Department
Verified email at uw.edu
Title
Cited by
Cited by
Year
Specificity of ARGONAUTE7-miR390 interaction and dual functionality in TAS3 trans-acting siRNA formation
TA Montgomery, MD Howell, JT Cuperus, D Li, JE Hansen, AL Alexander, ...
Cell 133 (1), 128-141, 2008
7192008
Evolution and functional diversification of MIRNA genes
JT Cuperus, N Fahlgren, JC Carrington
The Plant Cell 23 (2), 431-442, 2011
6252011
Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis
JT Cuperus, A Carbonell, N Fahlgren, H Garcia-Ruiz, RT Burke, A Takeda, ...
Nature structural & molecular biology 17 (8), 997, 2010
3772010
Functional analysis of three Arabidopsis ARGONAUTES using slicer-defective mutants
A Carbonell, N Fahlgren, H Garcia-Ruiz, KB Gilbert, TA Montgomery, ...
The Plant Cell 24 (9), 3613-3629, 2012
2182012
Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing
JT Cuperus, TA Montgomery, N Fahlgren, RT Burke, T Townsend, ...
Proceedings of the National Academy of Sciences 107 (1), 466-471, 2010
1352010
IMPa-4, an Arabidopsis importin α isoform, is preferentially involved in Agrobacterium-mediated plant transformation
S Bhattacharjee, LY Lee, H Oltmanns, H Cao, J Cuperus, SB Gelvin
The Plant Cell 20 (10), 2661-2680, 2008
1322008
Regulation and functional specialization of small RNA–target nodes during plant development
I Rubio-Somoza, JT Cuperus, D Weigel, JC Carrington
Current opinion in plant biology 12 (5), 622-627, 2009
1122009
New generation of artificial microRNA and synthetic trans-acting small interfering RNA vectors for efficient gene silencing in Arabidopsis
A Carbonell, A Takeda, N Fahlgren, SC Johnson, JT Cuperus, ...
Plant physiology 165 (1), 15-29, 2014
942014
Deep learning of the regulatory grammar of yeast 5′ untranslated regions from 500,000 random sequences
JT Cuperus, B Groves, A Kuchina, AB Rosenberg, N Jojic, S Fields, ...
Genome research 27 (12), 2015-2024, 2017
772017
Identification of genes required for de novo DNA methylation in Arabidopsis
MVC Greenberg, I Ausin, SWL Chan, SJ Cokus, JT Cuperus, S Feng, ...
Epigenetics 6 (3), 344-354, 2011
692011
Dynamics of gene expression in single root cells of Arabidopsis thaliana
K Jean-Baptiste, JL McFaline-Figueroa, CM Alexandre, MW Dorrity, ...
The Plant Cell 31 (5), 993-1011, 2019
562019
Agrobacterium rhizogenes GALLS protein substitutes for Agrobacterium tumefaciens single-stranded DNA-binding protein VirE2
LD Hodges, J Cuperus, W Ream
Journal of bacteriology 186 (10), 3065-3077, 2004
532004
Phytophthora have distinct endogenous small RNA populations that include short interfering and microRNAs
N Fahlgren, SR Bollmann, KD Kasschau, JT Cuperus, CM Press, ...
PLoS One 8 (10), e77181, 2013
522013
Translation start sequences affect the efficiency of silencing of Agrobacterium tumefaciens T-DNA oncogenes
H Lee, JL Humann, JS Pitrak, JT Cuperus, TD Parks, CA Whistler, ...
Plant physiology 133 (3), 966-977, 2003
392003
Complex Relationships between Chromatin Accessibility, Sequence Divergence, and Gene Expression in Arabidopsis thaliana
CM Alexandre, JR Urton, K Jean-Baptiste, J Huddleston, MW Dorrity, ...
Molecular biology and evolution 35 (4), 837-854, 2018
162018
A tetO Toolkit To Alter Expression of Genes in Saccharomyces cerevisiae
JT Cuperus, RS Lo, L Shumaker, J Proctor, S Fields
ACS synthetic biology 4 (7), 842-852, 2015
152015
Preferences in a trait decision determined by transcription factor variants
MW Dorrity, JT Cuperus, JA Carlisle, S Fields, C Queitsch
Proceedings of the National Academy of Sciences 115 (34), E7997-E8006, 2018
92018
The promise of single-cell genomics in plants
JL McFaline-Figueroa, C Trapnell, JT Cuperus
Current Opinion in Plant Biology 54, 114-121, 2020
42020
Identification of plant enhancers and their constituent elements by STARR-seq in tobacco leaves
T Jores, J Tonnies, MW Dorrity, JT Cuperus, S Fields, C Queitsch
bioRxiv, 2020.02. 17.952747, 2020
32020
Trait specificity mediated by alternative DNA-binding preferences of a single transcription factor in yeast
MW Dorrity, JT Cuperus, JA Carlisle, S Fields, C Queitsch
bioRxiv, 117911, 2017
22017
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