Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy JM De la Rosa-Trevín, A Quintana, L Del Cano, A Zaldívar, I Foche, ... Journal of structural biology 195 (1), 93-99, 2016 | 446 | 2016 |
MonoRes: automatic and accurate estimation of local resolution for electron microscopy maps JL Vilas, J Gómez-Blanco, P Conesa, R Melero, JM de la Rosa-Trevín, ... Structure 26 (2), 337-344. e4, 2018 | 165 | 2018 |
Automatic local resolution-based sharpening of cryo-EM maps E Ramírez-Aportela, JL Vilas, A Glukhova, R Melero, P Conesa, ... Bioinformatics 36 (3), 765-772, 2020 | 101 | 2020 |
Survey of the analysis of continuous conformational variability of biological macromolecules by electron microscopy COS Sorzano, A Jiménez, J Mota, JL Vilas, D Maluenda, M Martínez, ... Acta Crystallographica Section F: Structural Biology Communications 75 (1 …, 2019 | 53 | 2019 |
Continuous flexibility analysis of SARS-CoV-2 spike prefusion structures R Melero, COS Sorzano, B Foster, JL Vilas, M Martínez, R Marabini, ... IUCrJ 7 (6), 1059-1069, 2020 | 41 | 2020 |
A review of resolution measures and related aspects in 3D Electron Microscopy COS Sorzano, J Vargas, J Otón, V Abrishami, JM De La Rosa-Trevin, ... Progress in biophysics and molecular biology 124, 1-30, 2017 | 36 | 2017 |
A new algorithm for high-resolution reconstruction of single particles by electron microscopy COS Sorzano, J Vargas, JM de la Rosa-Trevín, A Jiménez, D Maluenda, ... Journal of structural biology 204 (2), 329-337, 2018 | 31 | 2018 |
A survey of the use of iterative reconstruction algorithms in electron microscopy COS Sorzano, J Vargas, J Otón, JM De la Rosa-Trevín, JL Vilas, ... BioMed research international 2017, 2017 | 31 | 2017 |
Measuring local-directional resolution and local anisotropy in cryo-EM maps JL Vilas, HD Tagare, J Vargas, JM Carazo, COS Sorzano Nature communications 11 (1), 55, 2020 | 28 | 2020 |
Optimal achromatic wave retarders using two birefringent wave plates JL Vilas, LM Sanchez-Brea, E Bernabeu Applied Optics 52 (9), 1892-1896, 2013 | 28 | 2013 |
Using Scipion for stream image processing at Cryo-EM facilities J Gómez-Blanco, JM de la Rosa-Trevín, R Marabini, L Del Cano, ... Journal of structural biology 204 (3), 457-463, 2018 | 27 | 2018 |
Design of superachromatic quarter-wave retarders in a broad spectral range JM Herrera-Fernandez, JL Vilas, LM Sanchez-Brea, E Bernabeu Applied optics 54 (33), 9758-9762, 2015 | 23 | 2015 |
Local resolution estimates of cryoEM reconstructions JL Vilas, JB Heymann, HD Tagare, E Ramírez-Aportela, JM Carazo, ... Current opinion in structural biology 64, 74-78, 2020 | 19 | 2020 |
Advances in image processing for single-particle analysis by electron cryomicroscopy and challenges ahead JL Vilas, N Tabassum, J Mota, D Maluenda, A Jiménez-Moreno, T Majtner, ... Current Opinion in Structural Biology 52, 127-145, 2018 | 16 | 2018 |
Advances in Xmipp for Cryo–Electron Microscopy: From Xmipp to Scipion D Strelak, A Jiménez-Moreno, JL Vilas, E Ramírez-Aportela, ... Molecules 26 (20), 6224, 2021 | 14 | 2021 |
Algorithmic robustness to preferred orientations in single particle analysis by CryoEM COS Sorzano, D Semchonok, SC Lin, YC Lo, JL Vilas, A Jiménez-Moreno, ... Journal of Structural Biology 213 (1), 107695, 2021 | 14 | 2021 |
Flexible workflows for on-the-fly electron-microscopy single-particle image processing using Scipion D Maluenda, T Majtner, P Horváth, JL Vilas, A Jiménez-Moreno, J Mota, ... Acta Crystallographica Section D: Structural Biology 75 (10), 882-894, 2019 | 11 | 2019 |
Swarm optimization as a consensus technique for Electron microscopy initial volume JVRM C. O. S. Sorzano, J. L. Vilas, A. Jimenez-Moreno, J. Mota, T. Majtner ... Applied Analysis and Optimization 2 (2), 299-313, 2018 | 11 | 2018 |
Re-examining the spectra of macromolecules. Current practice of spectral quasi B-factor flattening JL Vilas, J Vargas, M Martínez, E Ramírez-Aportela, R Melero, ... Journal of structural biology 209 (3), 107447, 2020 | 10 | 2020 |
Measurement of local resolution in electron tomography JL Vilas, J Oton, C Messaoudi, R Melero, P Conesa, E Ramírez-Aportela, ... Journal of Structural Biology: X 4, 100016, 2020 | 10 | 2020 |