| Ribosome stalling induced by mutation of a CNS-specific tRNA causes neurodegeneration R Ishimura, G Nagy, I Dotu, H Zhou, XL Yang, P Schimmel, S Senju, ... Science 345 (6195), 455-459, 2014 | 383 | 2014 |
| Activation of GCN2 kinase by ribosome stalling links translation elongation with translation initiation R Ishimura, G Nagy, I Dotu, JH Chuang, SL Ackerman Elife 5, e14295, 2016 | 127 | 2016 |
| Integrating chemical footprinting data into RNA secondary structure prediction K Zarringhalam, MM Meyer, I Dotu, JH Chuang, P Clote Public Library of Science 7 (10), e45160, 2012 | 94 | 2012 |
| On lattice protein structure prediction revisited I Dotu, M Cebrian, P Van Hentenryck, P Clote IEEE/ACM Transactions on Computational Biology and Bioinformatics 8 (6 …, 2011 | 90 | 2011 |
| RNAiFOLD: a constraint programming algorithm for RNA inverse folding and molecular design JA Garcia-Martin, P Clote, I Dotu Journal of bioinformatics and computational biology 11 (02), 1350001, 2013 | 85 | 2013 |
| Computing folding pathways between RNA secondary structures I Dotu, WA Lorenz, P Van Hentenryck, P Clote Nucleic acids research 38 (5), 1711-1722, 2010 | 51 | 2010 |
| A novel translational control mechanism involving RNA structures within coding sequences J Jungfleisch, DD Nedialkova, I Dotu, KE Sloan, N Martinez-Bosch, ... Genome research 27 (1), 95-106, 2017 | 50 | 2017 |
| Protein structure prediction on the face centered cubic lattice by local search P Clote, M Cebrian, I Dotu, PV Hentenryck Proceedings of the Twenty-Third AAAI Conference on Artificial Intelligence …, 2008 | 46 | 2008 |
| Local search-based hybrid algorithms for finding Golomb rulers C Cotta, I Dotu, AJ Fernandez, P Van Hentenryck Constraints 12, 263-291, 2007 | 45 | 2007 |
| Modeling choices in quasigroup completion: SAT vs. CSP C Ansótegui, A del Val, I Dotú, C Fernández, F Manya AAAI, 137-142, 2004 | 42 | 2004 |
| Scheduling social golfers locally I Dotú, P Van Hentenryck Integration of AI and OR Techniques in Constraint Programming for …, 2005 | 41 | 2005 |
| Complete RNA inverse folding: computational design of functional hammerhead ribozymes I Dotu, JA Garcia-Martin, BL Slinger, V Mechery, MM Meyer, P Clote Nucleic acids research 42 (18), 11752-11762, 2014 | 37 | 2014 |
| Redundant modeling for the quasigroup completion problem I Dotú, A Del Val, M Cebrián Lecture notes in computer science 2833, 288-302, 2003 | 36 | 2003 |
| RNAiFold 2.0: a web server and software to design custom and Rfam-based RNA molecules JA Garcia-Martin, I Dotu, P Clote Nucleic Acids Research 43 (W1), W513-W521, 2015 | 34 | 2015 |
| Genetic architectures of quantitative variation in RNA editing pathways T Gu, DM Gatti, A Srivastava, EM Snyder, N Raghupathy, P Simecek, ... Genetics 202 (2), 787-798, 2016 | 31 | 2016 |
| A simple hybrid evolutionary algorithm for finding Golomb rulers I Dotú, P Van Hentenryck 2005 IEEE Congress on Evolutionary Computation 3, 2018-2023, 2005 | 30 | 2005 |
| A note on low autocorrelation binary sequences I Dotú, P Van Hentenryck Principles and Practice of Constraint Programming-CP 2006: 12th …, 2006 | 29 | 2006 |
| A memetic approach to golomb rulers C Cotta, I Dotú, AJ Fernández, P Van Hentenryck Parallel Problem Solving from Nature-PPSN IX: 9th International Conference …, 2006 | 27 | 2006 |
| Segmentation and tracking of adherens junctions in 3D for the analysis of epithelial tissue morphogenesis R Cilla, V Mechery, B Hernandez de Madrid, S Del Signore, I Dotu, ... PLoS computational biology 11 (4), e1004124, 2015 | 25 | 2015 |
| RNAiFold: a web server for RNA inverse folding and molecular design JA Garcia-Martin, P Clote, I Dotu Nucleic acids research 41 (W1), W465-W470, 2013 | 25 | 2013 |
