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Vamsi Nallapareddy
Vamsi Nallapareddy
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Title
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Year
AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms
N Bordin, I Sillitoe, V Nallapareddy, C Rauer, SD Lam, VP Waman, N Sen, ...
Communications biology 6 (1), 160, 2023
512023
CATHe: Detection of remote homologues for CATH superfamilies using embeddings from protein language models
V Nallapareddy, N Bordin, I Sillitoe, M Heinzinger, M Littmann, VP Waman, ...
Bioinformatics 39 (1), btad029, 2023
232023
ABLE: Attention based learning for enzyme classification
MV Nallapareddy, R Dwivedula
Computational Biology and Chemistry 94, 107558, 2021
112021
DeepCys: structure-based multiple cysteine function prediction method trained on deep neural network: case study on Domains of Unknown Functions (DUFs) belonging to COX2 family
VM Nallapareddy, SR Bogam, H Devarakonda, S Paliwal, ...
PROTEINS: Structure, Function, and Bioinformatics, 2020
82020
Efficient cryo-electron tomogram simulation of macromolecular crowding with application to sars-cov-2
S Liu, Y Ma, X Ban, X Zeng, V Nallapareddy, A Chaudhari, M Xu
2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2020
72020
Alphafold2 reveals commonalities and novelties in protein structure space for 21 model organisms. bioRxiv, 2022
N Bordin, I Sillitoe, V Nallapareddy, C Rauer, SD Lam, VP Waman, N Sen, ...
URL https://www. biorxiv. org/content/early/2022/06/03/2022.06 2, 0
2
Improvements in CATH-Gene3D v4.3 and its applications to diverse sets of proteins
N Bordin, I Sillitoe, V Nallapareddy, M Littmann, M Heinzinger, B Rost, ...
UK Bioinformatics, and Computational Biology Conference, 2021
2021
Evaluating SERA 5 Competition for Sub-1 Mediated Cleavage of SERA 6 in Plasmodium Falciparum and Its Role in the Kinetics of Egress Using In-Silico Tools
S Bhat, V Nallapareddy, V Rajesh
Proceedings of International Conference on Drug Discovery (ICDD), 2020
2020
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