| Glyceraldehyde-3-phosphate dehydrogenase in neurodegeneration and apoptosis signaling WG Tatton, RME Chalmers-Redman, M Elstner, W Leesch, ... Advances in Research on Neurodegeneration, 77-100, 2000 | 135 | 2000 |
| KINARI-Web: A server for protein rigidity analysis N Fox, F Jagodzinski, Y Li, I Streinu Nucleic acids research 39 (suppl_2), W177-W183, 2011 | 80 | 2011 |
| Using rigidity analysis to probe mutation-induced structural changes in proteins F Jagodzinski, J Hardy, I Streinu Journal of bioinformatics and computational biology 10 (03), 1242010, 2012 | 46 | 2012 |
| Predicting the effect of single and multiple mutations on protein structural stability R Dehghanpoor, E Ricks, K Hursh, S Gunderson, R Farhoodi, N Haspel, ... Molecules 23 (2), 251, 2018 | 43 | 2018 |
| The XML log standard for digital libraries: analysis, evolution, and deployment MA Gonçalves, G Panchanathan, U Ravindranathan, A Krowne, EA Fox, ... 2003 Joint Conference on Digital Libraries, 2003. Proceedings., 312-314, 2003 | 34 | 2003 |
| Big holes in big data: A monte carlo algorithm for detecting large hyper-rectangles in high dimensional data J Lemley, F Jagodzinski, R Andonie 2016 IEEE 40th annual computer software and applications conference (COMPSAC …, 2016 | 21 | 2016 |
| Kinari-lib: a C++ library for pebble game rigidity analysis of mechanical models N Fox, F Jagodzinski, I Streinu Minisymposium on Publicly Available Geometric/Topological Software, 29-32, 2012 | 20 | 2012 |
| Quantifying the effects of prior knowledge in entry-level programming courses DH Smith IV, Q Hao, F Jagodzinski, Y Liu, V Gupta Proceedings of the ACM Conference on Global Computing Education, 30-36, 2019 | 17 | 2019 |
| ProMuteHT: A High Throughput Compute Pipeline for Generating Protein Mutants in silico E Andersson, F Jagodzinski Proceedings of the 8th ACM International Conference on Bioinformatics …, 2017 | 17 | 2017 |
| Towards modeling student engagement with interactive computing textbooks: An empirical study DH Smith IV, Q Hao, CD Hundhausen, F Jagodzinski, J Myers-Dean, ... Proceedings of the 52nd ACM Technical Symposium on Computer Science …, 2021 | 16 | 2021 |
| An evolutionary conservation & rigidity analysis machine learning approach for detecting critical protein residues F Jagodzinski, B Akbal-Delibas, N Haspel Proceedings of the International Conference on Bioinformatics, Computational …, 2013 | 16 | 2013 |
| Predicting the effect of point mutations on protein structural stability R Farhoodi, M Shelbourne, R Hsieh, N Haspel, B Hutchinson, ... Proceedings of the 8th ACM International Conference on Bioinformatics …, 2017 | 15 | 2017 |
| Assessing how multiple mutations affect protein stability using rigid cluster size distributions E Andersson, R Hsieh, H Szeto, R Farhoodi, N Haspel, F Jagodzinski 2016 IEEE 6th International Conference on Computational Advances in Bio and …, 2016 | 15 | 2016 |
| MotifAnalyzer‐PDZ: A computational program to investigate the evolution of PDZ‐binding target specificity J Valgardson, R Cosbey, P Houser, M Rupp, R Van Bronkhorst, M Lee, ... Protein Science 28 (12), 2127-2143, 2019 | 13 | 2019 |
| Mutation sensitivity maps: Identifying residue substitutions that impact protein structure via a rigidity analysis in silico mutation approach M Siderius, F Jagodzinski Journal of Computational Biology 25 (1), 89-102, 2018 | 13 | 2018 |
| A conservation and rigidity based method for detecting critical protein residues B Akbal-Delibas, F Jagodzinski, N Haspel BMC structural biology 13, 1-11, 2013 | 13 | 2013 |
| KINARI-Lib: A C++ library for mechanical modeling and pebble game rigidity analysis N Fox, F Jagodzinski, I Streinu Minisymposium on Publicly Available Geometric/-Topological Software, 29-32, 2012 | 12 | 2012 |
| Elucidating which pairwise mutations affect protein stability: An exhaustive big data approach N Majeske, F Jagodzinski 2018 IEEE 42nd Annual Computer Software and Applications Conference (COMPSAC …, 2018 | 10 | 2018 |
| Periodic rigidity of protein crystal structures P Clark, J Grant, S Monastra, F Jagodzinski, I Streinu 2012 IEEE 2nd International Conference on Computational Advances in Bio and …, 2012 | 10 | 2012 |
| Rigidity analysis of periodic crystal structures and protein biological assemblies F Jagodzinski, P Clark, T Liu, J Grant, S Monastra, I Streinu BMC Bioinf 14, S2, 2013 | 9 | 2013 |
