Ivan G. Costa
Ivan G. Costa
Professor, Institute of Computational Genomics, RWTH Aachen
Verified email at rwth-aachen.de - Homepage
Title
Cited by
Cited by
Year
Clustering cancer gene expression data: a comparative study
MCP de Souto, IG Costa, DSA de Araujo, TB Ludermir, A Schliep
BMC bioinformatics 9 (1), 497, 2008
3992008
Therapeutic inhibition of inflammatory monocyte recruitment reduces steatohepatitis and liver fibrosis
O Krenkel, T Puengel, O Govaere, AT Abdallah, JC Mossanen, ...
Hepatology 67 (4), 1270-1283, 2018
1492018
On the selection of appropriate distances for gene expression data clustering
PA Jaskowiak, RJGB Campello, IG Costa
BMC bioinformatics 15 (S2), S2, 2014
1272014
A multiple kernel learning algorithm for drug-target interaction prediction
ACA Nascimento, RBC Prudêncio, IG Costa
BMC bioinformatics 17 (1), 46, 2016
1032016
Analyzing gene expression time-courses
A Schliep, IG Costa, C Steinhoff, A Schonhuth
IEEE/ACM Transactions on computational biology and bioinformatics 2 (3), 179-193, 2005
982005
Human pluripotent stem cell-derived acinar/ductal organoids generate human pancreas upon orthotopic transplantation and allow disease modelling
M Hohwieler, A Illing, PC Hermann, T Mayer, M Stockmann, L Perkhofer, ...
Gut 66 (3), 473-486, 2017
962017
Analysis of computational footprinting methods for DNase sequencing experiments
EG Gusmao, M Allhoff, M Zenke, IG Costa
Nature methods 13 (4), 303-309, 2016
912016
CLEVER: clique-enumerating variant finder
T Marschall, IG Costa, S Canzar, M Bauer, GW Klau, A Schliep, ...
Bioinformatics 28 (22), 2875-2882, 2012
892012
Identification of transcription factor binding sites using ATAC-seq
Z Li, MH Schulz, T Look, M Begemann, M Zenke, IG Costa
Genome biology 20 (1), 45, 2019
872019
DNA methylation levels at individual age-associated CpG sites can be indicative for life expectancy
Q Lin, CI Weidner, IG Costa, RE Marioni, MRP Ferreira, IJ Deary, ...
Aging (Albany NY) 8 (2), 394, 2016
842016
Ranking and selecting clustering algorithms using a meta-learning approach
MCP De Souto, RBC Prudencio, RGF Soares, DSA De Araujo, IG Costa, ...
2008 IEEE International Joint Conference on Neural Networks (IEEE World …, 2008
812008
Comparative analysis of clustering methods for gene expression time course data
IG Costa, FAT de Carvalho, MCP de Souto
Genetics and Molecular Biology 27 (4), 623-631, 2004
762004
The lncRNA HOTAIR impacts on mesenchymal stem cells via triple helix formation
M Kalwa, S Hänzelmann, S Otto, CC Kuo, J Franzen, S Joussen, ...
Nucleic acids research 44 (22), 10631-10643, 2016
712016
Impact of missing data imputation methods on gene expression clustering and classification
MCP De Souto, PA Jaskowiak, IG Costa
BMC bioinformatics 16 (1), 64, 2015
712015
Surface topography guides morphology and spatial patterning of induced pluripotent stem cell colonies
G Abagnale, A Sechi, M Steger, Q Zhou, CC Kuo, G Aydin, C Schalla, ...
Stem cell reports 9 (2), 654-666, 2017
702017
Discovering motifs that induce sequencing errors
M Allhoff, A Schönhuth, M Martin, IG Costa, S Rahmann, T Marschall
BMC bioinformatics 14 (S5), S1, 2013
652013
Detection of active transcription factor binding sites with the combination of DNase hypersensitivity and histone modifications
EG Gusmao, C Dieterich, M Zenke, IG Costa
Bioinformatics 30 (22), 3143-3151, 2014
632014
Epigenetic age predictions based on buccal swabs are more precise in combination with cell type-specific DNA methylation signatures
M Eipel, F Mayer, T Arent, MRP Ferreira, C Birkhofer, U Gerstenmaier, ...
Aging (Albany NY) 8 (5), 1034, 2016
562016
Replicative senescence is associated with nuclear reorganization and with DNA methylation at specific transcription factor binding sites
S Hänzelmann, F Beier, EG Gusmao, CM Koch, S Hummel, I Charapitsa, ...
Clinical epigenetics 7 (1), 19, 2015
522015
HMGB2 loss upon senescence entry disrupts genomic organization and induces CTCF clustering across cell types
A Zirkel, M Nikolic, K Sofiadis, JP Mallm, CA Brackley, H Gothe, ...
Molecular cell 70 (4), 730-744. e6, 2018
502018
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