Artem Sokolov
Artem Sokolov
Harvard Medical School
Verified email at - Homepage
Cited by
Cited by
Comprehensive molecular portraits of human breast tumours
Cancer Genome Atlas Network
Nature 490 (7418), 61, 2012
A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature methods 10 (3), 221-227, 2013
Machine learning identifies stemness features associated with oncogenic dedifferentiation
TM Malta, A Sokolov, AJ Gentles, T Burzykowski, L Poisson, JN Weinstein, ...
Cell 173 (2), 338-354. e15, 2018
Clinical and genomic characterization of treatment-emergent small-cell neuroendocrine prostate cancer: a multi-institutional prospective study
R Aggarwal, J Huang, JJ Alumkal, L Zhang, FY Feng, GV Thomas, ...
Journal of Clinical Oncology 36 (24), 2492, 2018
Assessing the clinical utility of cancer genomic and proteomic data across tumor types
Y Yuan, EM Van Allen, L Omberg, N Wagle, A Amin-Mansour, A Sokolov, ...
Nature biotechnology 32 (7), 644-652, 2014
N-Myc drives neuroendocrine prostate cancer initiated from human prostate epithelial cells
JK Lee, JW Phillips, BA Smith, JW Park, T Stoyanova, EF McCaffrey, ...
Cancer cell 29 (4), 536-547, 2016
Inferring causal molecular networks: empirical assessment through a community-based effort
SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ...
Nature methods 13 (4), 310-318, 2016
The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution
O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ...
Cell 181 (2), 236-249, 2020
A basal stem cell signature identifies aggressive prostate cancer phenotypes
BA Smith, A Sokolov, V Uzunangelov, R Baertsch, Y Newton, K Graim, ...
Proceedings of the National Academy of Sciences 112 (47), E6544-E6552, 2015
Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open …
J Guinney, T Wang, TD Laajala, KK Winner, JC Bare, EC Neto, SA Khan, ...
The Lancet Oncology 18 (1), 132-142, 2017
A distinct DNA methylation shift in a subset of glioma CpG island methylator phenotypes during tumor recurrence
CF de Souza, TS Sabedot, TM Malta, L Stetson, O Morozova, A Sokolov, ...
Cell reports 23 (2), 637-651, 2018
PARADIGM-SHIFT predicts the function of mutations in multiple cancers using pathway impact analysis
S Ng, EA Collisson, A Sokolov, T Goldstein, A Gonzalez-Perez, ...
Bioinformatics 28 (18), i640-i646, 2012
Unbiased tournament selection
A Sokolov, D Whitley
Proceedings of the 7th annual conference on Genetic and evolutionary …, 2005
Hierarchical classification of gene ontology terms using the GOstruct method
A Sokolov, A Ben-Hur
Journal of bioinformatics and computational biology 8 (02), 357-376, 2010
Pathway-based genomics prediction using generalized elastic net
A Sokolov, DE Carlin, EO Paull, R Baertsch, JM Stuart
PLoS computational biology 12 (3), e1004790, 2016
Geometric subspace methods and time-delay embedding for EEG artifact removal and classification
CW Anderson, JN Knight, T O'Connor, MJ Kirby, A Sokolov
IEEE Transactions on Neural Systems and Rehabilitation Engineering 14 (2 …, 2006
Combining heterogeneous data sources for accurate functional annotation of proteins
A Sokolov, C Funk, K Graim, K Verspoor, A Ben-Hur
BMC bioinformatics 14 (3), 1-13, 2013
Characterization of neuroendocrine prostate cancer (NEPC) in patients with metastatic castration resistant prostate cancer (mCRPC) resistant to abiraterone (Abi) or …
EJ Small, J Huang, J Youngren, A Sokolov, RR Aggarwal, G Thomas, ...
Journal of Clinical Oncology 33 (15_suppl), 5003-5003, 2015
One-class detection of cell states in tumor subtypes
A Sokolov, EO Paull, JM Stuart
Biocomputing 2016: Proceedings of the Pacific Symposium, 405-416, 2016
Machine learning identifies candidates for drug repurposing in Alzheimer’s disease
S Rodriguez, C Hug, P Todorov, N Moret, SA Boswell, K Evans, G Zhou, ...
Nature Communications 12 (1), 1-13, 2021
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