Marc F. Lensink

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Jerome de RuyckUGSF - Université de LilleVerified email at univ-lille.fr
Raul Mendez GiraldezNational Institute of Environmental Health Sciences (NIEHS)Verified email at nih.gov
Julie BouckaertUnite de Glycobiologie Structurale et FonctionelleVerified email at univ-lille.fr
Eva-Maria KrammerPost-doctoral researcher, ULB, BelgiumVerified email at ulb.ac.be
Benoit DessaillyPost-Doctoral Fellow, National Institute of Biomedical Innovation, Osaka, JapanVerified email at nibio.go.jp
Gerrit GroenhofDepartment of Chemistry & Nanoscience Center, University of JyväskyläVerified email at jyu.fi
Alan E. MarkProfessor of Biophysical Chemistry, University of QueenslandVerified email at uq.edu.au
Cedric GovaertsUniversité Libre de BruxellesVerified email at ulb.ac.be
giovanna chiminiAix Marseilel UniversityVerified email at ciml.univ-mrs.fr
Rostyslav BilyyDanylo Halytsky Lviv National Medical University, Institute of Cellular Biology and PathologyVerified email at meduniv.lviv.ua
Tetiana Dumych (Shkandina)Danylo Halytsky Lviv National Medical UniversityVerified email at meduniv.lviv.ua
Lloyd RuddockProfessor of Protein Science, University of OuluVerified email at oulu.fi
Fabrizio CleriIEMN Cnrs (Inst. of Electronics, Microelectronics and Nanotechnology) University of Lille I, FranceVerified email at univ-lille1.fr
Petras KundrotasVerified email at ku.edu
Christine OrengoProfessor of Bioinformatics, University College LondonVerified email at biochem.ucl.ac.uk
Dima KozakovProfessor, Department of Applied Mathematics and StatisticsVerified email at stonybrook.edu
Chaok SeokSeoul National UniversityVerified email at snu.ac.kr
Lim HeoBristol Myers SquibbVerified email at bms.com
Minkyung BaekSchool of Biological Sciences, Seoul National UniversityVerified email at snu.ac.kr
Angela AmoresanoProfessore Ordinario di Chimica Analitica, Dipartimento di Scienze Chimiche, Università di NapoliVerified email at unina.it

Marc F. Lensink

University of Lille, CNRS UMR8576 UGSF

Verified email at univ-lille1.fr - Homepage

protein protein interaction molecular dynamics protein networks


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Docking and scoring protein complexes: CAPRI 3rd Edition MF Lensink, R Méndez, SJ Wodak Proteins: Structure, Function, and Bioinformatics 69 (4), 704-718, 2007	423	2007
Assessment of CAPRI predictions in rounds 3–5 shows progress in docking procedures R Méndez, R Leplae, MF Lensink, SJ Wodak Proteins: Structure, Function, and Bioinformatics 60 (2), 150-169, 2005	409	2005
Molecular docking as a popular tool in drug design, an in silico travel J De Ruyck, G Brysbaert, R Blossey, MF Lensink Advances and Applications in Bioinformatics and Chemistry, 1-11, 2016	365	2016
Docking and scoring protein interactions: CAPRI 2009 MF Lensink, SJ Wodak Proteins: Structure, Function, and Bioinformatics 78 (15), 3073-3084, 2010	273	2010
Docking, scoring, and affinity prediction in CAPRI MF Lensink, SJ Wodak Proteins: Structure, Function, and Bioinformatics 81 (12), 2082-2095, 2013	267	2013
Modeling protein–protein and protein–peptide complexes: CAPRI 6th edition MF Lensink, S Velankar, SJ Wodak Proteins: Structure, Function, and Bioinformatics 85 (3), 359-377, 2017	230	2017
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ... Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016	164	2016
A conserved arginine plays a role in the catalytic cycle of the protein disulphide isomerases AK Lappi, MF Lensink, HI Alanen, KEH Salo, M Lobell, AH Juffer, ... Journal of molecular biology 335 (1), 283-295, 2004	158	2004
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019	115	2019
LigASite—a database of biologically relevant binding sites in proteins with known apo -structures BH Dessailly, MF Lensink, CA Orengo, SJ Wodak Nucleic acids research 36 (suppl_1), D667-D673, 2007	105	2007
Modeling protein‐protein, protein‐peptide, and protein‐oligosaccharide complexes: CAPRI 7th edition MF Lensink, N Nadzirin, S Velankar, SJ Wodak Proteins: Structure, Function, and Bioinformatics 88 (8), 916-938, 2020	101	2020
The challenge of modeling protein assemblies: the CASP12‐CAPRI experiment MF Lensink, S Velankar, M Baek, L Heo, C Seok, SJ Wodak Proteins: Structure, Function, and Bioinformatics 86, 257-273, 2018	92	2018
Blind predictions of protein interfaces by docking calculations in CAPRI MF Lensink, SJ Wodak Proteins: Structure, Function, and Bioinformatics 78 (15), 3085-3095, 2010	89	2010
Phosphorylation by protein kinase CK2 modulates the activity of the ATP binding cassette A1 transporter S Roosbeek, F Peelman, A Verhee, C Labeur, H Caster, MF Lensink, ... Journal of Biological Chemistry 279 (36), 37779-37788, 2004	84	2004
Signal transduction in the photoactive yellow protein. I. Photon absorption and the isomerization of the chromophore G Groenhof, MF Lensink, HJC Berendsen, JG Snijders, AE Mark Proteins: Structure, Function, and Bioinformatics 48 (2), 202-211, 2002	84	2002
Penetratin-membrane association: W48/R52/W56 shield the peptide from the aqueous phase MF Lensink, B Christiaens, J Vandekerckhove, A Prochiantz, M Rosseneu Biophysical Journal 88 (2), 939-952, 2005	82	2005
Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ... Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021	78	2021
Score_set: a CAPRI benchmark for scoring protein complexes MF Lensink, SJ Wodak Proteins: Structure, Function, and Bioinformatics 82 (11), 3163-3169, 2014	70	2014
The Antiadhesive Strategy in Crohn′s Disease: Orally Active Mannosides to Decolonize Pathogenic Escherichia coli from the Gut D Alvarez Dorta, A Sivignon, T Chalopin, TI Dumych, G Roos, RO Bilyy, ... ChemBioChem 17 (10), 936-952, 2016	62	2016
Blind prediction of interfacial water positions in CAPRI MF Lensink, IH Moal, PA Bates, PL Kastritis, ASJ Melquiond, E Karaca, ... Proteins: Structure, Function, and Bioinformatics 82 (4), 620-632, 2014	61	2014

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