| BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchęne, M Fourment, ... PLoS computational biology 15 (4), e1006650, 2019 | 517 | 2019 |
| PoPoolation: a toolbox for population genetic analysis of next generation sequencing data from pooled individuals R Kofler, P Orozco-terWengel, N De Maio, RV Pandey, V Nolte, A Futschik, ... PloS one 6 (1), e15925, 2011 | 411 | 2011 |
| Evolutionary history of the global emergence of the Escherichia coli epidemic clone ST131 N Stoesser, AE Sheppard, L Pankhurst, N De Maio, CE Moore, R Sebra, ... MBio 7 (2), 2016 | 168 | 2016 |
| New routes to phylogeography: a Bayesian structured coalescent approximation N De Maio, CH Wu, KM O’Reilly, D Wilson PLoS Genet 11 (8), e1005421, 2015 | 132 | 2015 |
| VARIATION IN THERMAL PERFORMANCE AND REACTION NORMS AMONG POPULATIONS OF DROSOPHILA MELANOGASTER P Klepsatel, M Gáliková, N De Maio, CD Huber, C Schlötterer, T Flatt Evolution 67 (12), 3573-3587, 2013 | 72 | 2013 |
| SCOTTI: efficient reconstruction of transmission within outbreaks with the structured coalescent N De Maio, CH Wu, DJ Wilson PLoS computational biology 12 (9), e1005130, 2016 | 66 | 2016 |
| Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes N De Maio, LP Shaw, A Hubbard, S George, ND Sanderson, J Swann, ... Microbial genomics 5 (9), 2019 | 59 | 2019 |
| Linking great apes genome evolution across time scales using polymorphism-aware phylogenetic models N De Maio, C Schlötterer, C Kosiol Molecular biology and evolution 30 (10), 2249-2262, 2013 | 58 | 2013 |
| Reproductive and post‐reproductive life history of wild‐caught Drosophila melanogaster under laboratory conditions P Klepsatel, M Gáliková, N De Maio, S Ricci, C Schlötterer, T Flatt Journal of Evolutionary Biology 26 (7), 1508-1520, 2013 | 56 | 2013 |
| PoMo: an allele frequency-based approach for species tree estimation N De Maio, D Schrempf, C Kosiol Systematic biology 64 (6), 1018-1031, 2015 | 54 | 2015 |
| Covert dissemination of carbapenemase-producing Klebsiella pneumoniae (KPC) in a successfully controlled outbreak: long-and short-read whole-genome sequencing demonstrate … J Martin, HTT Phan, J Findlay, N Stoesser, L Pankhurst, I Navickaite, ... Journal of Antimicrobial Chemotherapy 72 (11), 3025-3034, 2017 | 48 | 2017 |
| Reversible polymorphism-aware phylogenetic models and their application to tree inference D Schrempf, BQ Minh, N De Maio, A von Haeseler, C Kosiol Journal of theoretical biology 407, 362-370, 2016 | 47 | 2016 |
| Modernizing Medical Microbiology Informatics Group (MMMIG). 2016 N Stoesser, AE Sheppard, L Pankhurst, N De Maio, CE Moore, R Sebra, ... Evolutionary history of the global emergence of the Escherichia coli …, 0 | 38 | |
| Bayesian reconstruction of transmission within outbreaks using genomic variants N De Maio, CJ Worby, DJ Wilson, N Stoesser PLoS computational biology 14 (4), e1006117, 2018 | 37 | 2018 |
| Pneumococcal Capsule Synthesis Locus cps as Evolutionary Hotspot with Potential to Generate Novel Serotypes by Recombination RJ Mostowy, NJ Croucher, N De Maio, C Chewapreecha, SJ Salter, ... Molecular biology and evolution 34 (10), 2537-2554, 2017 | 37 | 2017 |
| Two Distinct Patterns of Clostridium difficile Diversity Across Europe Indicating Contrasting Routes of Spread DW Eyre, KA Davies, G Davis, WN Fawley, KE Dingle, N De Maio, ... Clinical Infectious Diseases 67 (7), 1035-1044, 2018 | 33 | 2018 |
| Issues with SARS-CoV-2 sequencing data N De Maio, C Walker, R Borges, L Weilguny, G Slodkowicz, N Goldman | 31 | 2020 |
| Estimating empirical codon hidden Markov models N De Maio, I Holmes, C Schlötterer, C Kosiol Molecular biology and evolution 30 (3), 725-736, 2013 | 24 | 2013 |
| Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines SJ Bush, D Foster, DW Eyre, EL Clark, N De Maio, LP Shaw, N Stoesser, ... GigaScience 9 (2), giaa007, 2020 | 19 | 2020 |
| The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples HS Gweon, LP Shaw, J Swann, N De Maio, M AbuOun, R Niehus, ... Environmental Microbiome 14 (1), 1-15, 2019 | 18 | 2019 |
Daniel J WilsonUniversity of OxfordVerified email at bdi.ox.ac.uk
