Pablo Carbonell

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Jean-Loup FaulonINRA, Micalis Institute, France and U. Manchester, UKVerified email at inra.fr
Neil SwainstonEpoch BiodesignVerified email at epochbiodesign.com
Rainer BreitlingProfessor of Systems Biology, Manchester Institute of Biotechnology, University of ManchesterVerified email at manchester.ac.uk
Nigel ScruttonProfessor of Enzymology, Manchester Institute of Biotechnology (MIB) and School of ChemistryVerified email at manchester.ac.uk
Eriko TakanoProfessor of Synthetic Biology, Manchester Institute of Biotechnology, University of ManchesterVerified email at manchester.ac.uk
Adrian J JervisUniversity of ManchesterVerified email at manchester.ac.uk
Thomas DuigouINRAE, FranceVerified email at inrae.fr
Chris RobinsonExperimental Officer, SYNBIOCHEM Centre, MIB, the University of Manchester, UK.Verified email at manchester.ac.uk
Cunyu YanManchester Institute of Biotechnology, University of ManchesterVerified email at manchester.ac.uk
Zhong-Ping JiangProfessor of Electrical and Computer Engineering, Tandon School of Engineering, NYUVerified email at nyu.edu
NJ TurnerProfessor of Chemical Biology, Manchester UniversityVerified email at manchester.ac.uk
Douglas KellUniversity of LiverpoolVerified email at liv.ac.uk
Katherine Anne HollywoodManchester Institute of Biotechnology, School of Chemistry, University of ManchesterVerified email at manchester.ac.uk
Joan HérissonResearch engineerVerified email at univ-evry.fr
Ioana GrigorasUniv. Evry Paris-Saclay / UMR8030 Génomique Métabolique / Lab. of Systems and Synthetic BiologyVerified email at univ-evry.fr
Nicholas J W RattraySenior Lecturer in Clinical MetabolismVerified email at strath.ac.uk
Maria VinaixaUniversitat Rovira i VirgiliVerified email at urv.cat
Philip ShapiraManchester Institute of Innovation Research, U Manchester Georgia Institute of Technology GTSTIPVerified email at gatech.edu
Tamás FehérBiological Research Centre, Szeged, HungaryVerified email at brc.hu
Valentin ZulkowerGinkgo BioworksVerified email at ginkgobioworks.com

Pablo Carbonell

Universitat Politècnica de València, ai2 Institute, I2SysBio, CSIC

Verified email at upv.es - Homepage

Synthetic Biology Systems Biology Computational Biology Lab Automation Biological Engineering


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An automated Design-Build-Test-Learn pipeline for enhanced microbial production of fine chemicals P Carbonell, AJ Jervis, CJ Robinson, C Yan, M Dunstan, N Swainston, ... Communications biology 1 (1), 66, 2018	258	2018
RetroPath2. 0: a retrosynthesis workflow for metabolic engineers B Delépine, T Duigou, P Carbonell, JL Faulon Metabolic engineering 45, 158-170, 2018	255	2018
Pathways to cellular supremacy in biocomputing L Grozinger, M Amos, TE Gorochowski, P Carbonell, DA Oyarzún, R Stoof, ... Nature communications 10 (1), 5250, 2019	173	2019
Opportunities at the intersection of synthetic biology, machine learning, and automation P Carbonell, T Radivojevic, H Garcia Martin ACS synthetic biology 8 (7), 1474-1477, 2019	146	2019
A retrosynthetic biology approach to metabolic pathway design for therapeutic production P Carbonell, AG Planson, D Fichera, JL Faulon BMC systems biology 5, 1-18, 2011	139	2011
Nonlinear control of a pneumatic muscle actuator: backstepping vs. sliding-mode P Carbonell, ZP Jiang, DW Repperger Proceedings of the 2001 IEEE International Conference on Control …, 2001	136	2001
XTMS: pathway design in an eXTended metabolic space P Carbonell, P Parutto, J Herisson, SB Pandit, JL Faulon Nucleic acids research 42 (W1), W389-W394, 2014	128	2014
RetroRules: a database of reaction rules for engineering biology T Duigou, M Du Lac, P Carbonell, JL Faulon Nucleic acids research 47 (D1), D1229-D1235, 2019	120	2019
Selenzyme: enzyme selection tool for pathway design P Carbonell, J Wong, N Swainston, E Takano, NJ Turner, NS Scrutton, ... Bioinformatics 34 (12), 2153-2154, 2018	118	2018
Machine Learning of Designed Translational Control Allows Predictive Pathway Optimization in Escherichia coli AJ Jervis, P Carbonell, M Vinaixa, MS Dunstan, KA Hollywood, ... ACS synthetic biology 8 (1), 127-136, 2018	101	2018
Synthetic biology for pharmaceutical drug discovery JY Trosset, P Carbonell Drug design, development and therapy, 6285-6302, 2015	99	2015
Retropath: automated pipeline for embedded metabolic circuits P Carbonell, P Parutto, C Baudier, C Junot, JL Faulon ACS synthetic biology 3 (8), 565-577, 2014	99	2014
Molecular signatures-based prediction of enzyme promiscuity P Carbonell, JL Faulon Bioinformatics 26 (16), 2012-2019, 2010	98	2010
Enumerating metabolic pathways for the production of heterologous target chemicals in chassis organisms P Carbonell, D Fichera, SB Pandit, JL Faulon BMC systems biology 6, 1-18, 2012	93	2012
Origins of specificity and promiscuity in metabolic networks P Carbonell, G Lecointre, JL Faulon Journal of Biological Chemistry 286 (51), 43994-44004, 2011	88	2011
Semisupervised Gaussian process for automated enzyme search J Mellor, I Grigoras, P Carbonell, JL Faulon ACS synthetic biology 5 (6), 518-528, 2016	79	2016
Bioinformatics for the synthetic biology of natural products: integrating across the Design–Build–Test cycle P Carbonell, A Currin, AJ Jervis, NJ Rattray, N Swainston, C Yan, ... Natural product reports 33 (8), 925-932, 2016	78	2016
SensiPath: computer-aided design of sensing-enabling metabolic pathways B Delépine, V Libis, P Carbonell, JL Faulon Nucleic acids research 44 (W1), W226-W231, 2016	76	2016
Validation of RetroPath, a computer‐aided design tool for metabolic pathway engineering T Fehér, AG Planson, P Carbonell, A Fernández‐Castané, I Grigoras, ... Biotechnology journal 9 (11), 1446-1457, 2014	68	2014
Stereo signature molecular descriptor P Carbonell, L Carlsson, JL Faulon Journal of chemical information and modeling 53 (4), 887-897, 2013	68	2013

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