| The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements AM Altenhoff, N Škunca, N Glover, CM Train, A Sueki, I Piližota, K Gori, ... Nucleic acids research 43 (D1), D240-D249, 2015 | 240 | 2015 |
| The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces AM Altenhoff, NM Glover, CM Train, K Kaleb, A Warwick Vesztrocy, ... Nucleic acids research 46 (D1), D477-D485, 2018 | 239 | 2018 |
| Standardized benchmarking in the quest for orthologs AM Altenhoff, B Boeckmann, S Capella-Gutierrez, DA Dalquen, T DeLuca, ... Nature methods 13 (5), 425-430, 2016 | 230 | 2016 |
| OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more AM Altenhoff, CM Train, KJ Gilbert, I Mediratta, T Mendes de Farias, D Moi, ... Nucleic acids research 49 (D1), D373-D379, 2021 | 152 | 2021 |
| Orthologous Matrix (OMA) algorithm 2.0: more robust to asymmetric evolutionary rates and more scalable hierarchical orthologous group inference CM Train, NM Glover, GH Gonnet, AM Altenhoff, C Dessimoz Bioinformatics 33 (14), i75-i82, 2017 | 89 | 2017 |
| iHam and pyHam: visualizing and processing hierarchical orthologous groups CM Train, M Pignatelli, A Altenhoff, C Dessimoz Bioinformatics 35 (14), 2504-2506, 2019 | 23 | 2019 |
| New genome assembly of the barn owl (Tyto alba alba) AL Ducrest, S Neuenschwander, E Schmid‐Siegert, M Pagni, C Train, ... Ecology and evolution 10 (5), 2284-2298, 2020 | 9 | 2020 |
| Quest for Orthologs consortium, Toni Gabaldón, Suzanna E Lewis, Paul D Thomas, Erik Sonnhammer, and Christophe Dessimoz. Standardized benchmarking in the quest for orthologs AM Altenhoff, B Boeckmann, S Capella-Gutierrez, DA Dalquen, T DeLuca, ... Nature Methods 13, 425-430, 2016 | 8 | 2016 |
| OMA orthology in 2024: improved prokaryote coverage, ancestral and extant GO enrichment, a revamped synteny viewer and more in the OMA Ecosystem AM Altenhoff, A Warwick Vesztrocy, C Bernard, CM Train, ... Nucleic Acids Research 52 (D1), D513-D521, 2024 | 5 | 2024 |
| Multifaceted quality assessment of gene repertoire annotation with OMArk Y Nevers, V Rossier, CM Train, A Altenhoff, C Dessimoz, N Glover bioRxiv, 2022.11. 25.517970, 2022 | 5 | 2022 |
| Taxon sampling unequally affects individual nodes in a phylogenetic tree: consequences for model gene tree construction in SwissTree B Boeckmann, D Dylus, S Moretti, A Altenhoff, CM Train, E Kriventseva, ... biorxiv, 181966, 2017 | 4 | 2017 |
| Phylogenetic approaches to identifying fragments of the same gene, with application to the wheat genome I Piližota, CM Train, A Altenhoff, H Redestig, C Dessimoz Bioinformatics 35 (7), 1159-1166, 2019 | 3 | 2019 |
| Quality assessment of gene repertoire annotations with OMArk Y Nevers, A Warwick Vesztrocy, V Rossier, CM Train, A Altenhoff, ... Nature Biotechnology, 1-10, 2024 | 1 | 2024 |
| Matreex: compact and interactive visualisation for scalable studies of large gene families V Rossier, C Train, Y Nevers, M Robinson-Rechavi, C Dessimoz | | 2023 |
| Matreex: compact and interactive visualisation of large gene families provides evidence for loss of intraflagellar transport in a myxozoan V Rossier, C Train, Y Nevers, M Robinson-Rechavi, C Dessimoz bioRxiv, 2023.02. 18.529053, 2023 | | 2023 |
| Inferring Hierarchical Orthologous Groups C Train éditeur non identifié, 2019 | | 2019 |
Christophe DessimozProfessor at UNIL and Director of SIB Swiss Institute of BioinformaticsCorreu electrònic verificat a unil.ch
