|SBML Level 3: an extensible format for the exchange and reuse of biological models|
SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ...
Molecular Systems Biology 16 (8), e9110, 2020
|Predicting the future direction of cell movement with convolutional neural networks|
S Nishimoto, Y Tokuoka, TG Yamada, NF Hiroi, A Funahashi
PloS one 14 (9), e0221245, 2019
|Transcriptome analysis of the anhydrobiotic cell line Pv11 infers the mechanism of desiccation tolerance and recovery|
TG Yamada, Y Suetsugu, R Deviatiiarov, O Gusev, R Cornette, ...
Scientific reports 8 (1), 1-11, 2018
|Identification of a master transcription factor and a regulatory mechanism for desiccation tolerance in the anhydrobiotic cell line Pv11|
TG Yamada, Y Hiki, NF Hiroi, E Shagimardanova, O Gusev, R Cornette, ...
PloS one 15 (3), e0230218, 2020
|Deep learning for non-invasive determination of the differentiation status of human neuronal cells by using phase-contrast photomicrographs|
M Ooka, Y Tokuoka, S Nishimoto, NF Hiroi, TG Yamada, A Funahashi
Applied Sciences 9 (24), 5503, 2019
|3D convolutional neural networks-based segmentation to acquire quantitative criteria of the nucleus during mouse embryogenesis|
Y Tokuoka, TG Yamada, D Mashiko, Z Ikeda, NF Hiroi, TJ Kobayashi, ...
NPJ systems biology and applications 6 (1), 1-12, 2020
|Direct Cell Counting Using Macro-Scale Smartphone Images of Cell Aggregates|
C Imashiro, Y Tokuoka, K Kikuhara, TG Yamada, K Takemura, ...
IEEE Access 8, 170033-170043, 2020
|Neural differentiation dynamics controlled by multiple feedback loops in a comprehensive molecular interaction network|
T Iwasaki, R Takiguchi, T Hiraiwa, TG Yamada, K Yamazaki, NF Hiroi, ...
Processes 8 (2), 166, 2020
|Activation of cell migration via morphological changes in focal adhesions depends on shear stress in MYCN-amplified neuroblastoma cells|
T Hiraiwa, TG Yamada, N Miki, A Funahashi, N Hiroi
Journal of the Royal Society Interface 16 (152), 20180934, 2019
|XitoSBML: a modeling tool for creating spatial SBML models from microscopic images|
K Ii, K Mashimo, M Ozeki, TG Yamada, NF Hiroi, A Funahashi
Frontiers in Genetics 10, 1027, 2019
|Quantitative analysis of sensitivity to a Wnt3a gradient in determination of the pole‐to‐pole axis of mitotic cells by using a microfluidic device|
T Hiraiwa, Y Nakai, TG Yamada, R Tanimoto, H Kimura, Y Matsumoto, ...
FEBS open bio 8 (12), 1920-1935, 2018