Andrew L Ferguson
Andrew L Ferguson
Associate Professor of Molecular Engineering, University of Chicago
Correu electrònic verificat a - Pàgina d'inici
Citada per
Citada per
Investigating the optimal size of anticancer nanomedicine
L Tang, X Yang, Q Yin, K Cai, H Wang, I Chaudhury, C Yao, Q Zhou, ...
Proceedings of the National Academy of Sciences 111 (43), 15344-15349, 2014
Translating HIV sequences into quantitative fitness landscapes predicts viral vulnerabilities for rational immunogen design
AL Ferguson, JK Mann, S Omarjee, T Ndung’u, BD Walker, ...
Immunity 38 (3), 606-617, 2013
Solubility and Molecular Conformations of n-Alkane Chains in Water
AL Ferguson, PG Debenedetti, AZ Panagiotopoulos
The Journal of Physical Chemistry B 113 (18), 6405-6414, 2009
Systematic determination of order parameters for chain dynamics using diffusion maps
AL Ferguson, AZ Panagiotopoulos, PG Debenedetti, IG Kevrekidis
Proceedings of the National Academy of Sciences 107 (31), 13597-13602, 2010
The fitness landscape of HIV-1 gag: advanced modeling approaches and validation of model predictions by in vitro testing
JK Mann, JP Barton, AL Ferguson, S Omarjee, BD Walker, A Chakraborty, ...
PLoS Comput Biol 10 (8), e1003776, 2014
Nonlinear dimensionality reduction in molecular simulation: The diffusion map approach
AL Ferguson, AZ Panagiotopoulos, IG Kevrekidis, PG Debenedetti
Chemical Physics Letters 509 (1), 1-11, 2011
Helical antimicrobial polypeptides with radial amphiphilicity
M Xiong, MW Lee, RA Mansbach, Z Song, Y Bao, RM Peek, C Yao, ...
Proceedings of the National Academy of Sciences 112 (43), 13155-13160, 2015
Mapping membrane activity in undiscovered peptide sequence space using machine learning
EY Lee, BM Fulan, GCL Wong, AL Ferguson
Proceedings of the National Academy of Sciences 113 (48), 13588-13593, 2016
Promoting transparency and reproducibility in enhanced molecular simulations
M Bonomi, G Bussi, C Camilloni, GA Tribello, P Banáš, A Barducci, ...
Nature methods 16 (8), 670-673, 2019
Spin models inferred from patient-derived viral sequence data faithfully describe HIV fitness landscapes
K Shekhar, CF Ruberman, AL Ferguson, JP Barton, M Kardar, ...
Physical review E 88 (6), 062705, 2013
Integrating diffusion maps with umbrella sampling: Application to alanine dipeptide
AL Ferguson, AZ Panagiotopoulos, PG Debenedetti, IG Kevrekidis
The Journal of chemical physics 134 (13), 04B606, 2011
Supramolecular polymorphism: tunable electronic interactions within π-conjugated peptide nanostructures dictated by primary amino acid sequence
BD Wall, AE Zacca, AM Sanders, WL Wilson, AL Ferguson, JD Tovar
Langmuir 30 (20), 5946-5956, 2014
Machine learning and data science in soft materials engineering
AL Ferguson
Journal of Physics: Condensed Matter 30 (4), 043002, 2017
Nonlinear machine learning of patchy colloid self-assembly pathways and mechanisms
AW Long, AL Ferguson
The Journal of Physical Chemistry B 118 (15), 4228-4244, 2014
An experimental and computational investigation of spontaneous lasso formation in microcin J25
AL Ferguson, S Zhang, I Dikiy, AZ Panagiotopoulos, PG Debenedetti, ...
Biophysical journal 99 (9), 3056-3065, 2010
Molecular enhanced sampling with autoencoders: On‐the‐fly collective variable discovery and accelerated free energy landscape exploration
W Chen, AL Ferguson
Journal of computational chemistry 39 (25), 2079-2102, 2018
Machine learning for autonomous crystal structure identification
WF Reinhart, AW Long, MP Howard, AL Ferguson, AZ Panagiotopoulos
Soft Matter 13 (27), 4733-4745, 2017
A computational investigation of the phase behavior and capillary sublimation of water confined between nanoscale hydrophobic plates
AL Ferguson, N Giovambattista, PJ Rossky, AZ Panagiotopoulos, ...
The Journal of Chemical Physics 137 (14), 144501, 2012
Collective variable discovery and enhanced sampling using autoencoders: Innovations in network architecture and error function design
W Chen, AR Tan, AL Ferguson
The Journal of chemical physics 149 (7), 072312, 2018
Mesoscale simulation of asphaltene aggregation
J Wang, AL Ferguson
The Journal of Physical Chemistry B 120 (32), 8016-8035, 2016
En aquests moments el sistema no pot dur a terme l'operació. Torneu-ho a provar més tard.
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