Nicola Soranzo
Nicola Soranzo
Earlham Institute
Verified email at earlham.ac.uk - Homepage
Title
Cited by
Cited by
Year
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update
E Afgan, D Baker, M van den Beek, D Blankenberg, D Bouvier, M Čech, ...
Nucleic Acids Research 44 (W1), W3-W10, 2016
14802016
Wisdom of crowds for robust gene network inference
D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ...
Nature Methods 9 (8), 796-804, 2012
13912012
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
E Afgan, D Baker, B Batut, M van den Beek, D Bouvier, M Čech, J Chilton, ...
Nucleic Acids Research 46 (W1), W537-W544, 2018
13822018
Bioconda: sustainable and comprehensive software distribution for the life sciences.
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475, 2018
4112018
Comparing association network algorithms for reverse engineering of large-scale gene regulatory networks: synthetic versus real data
N Soranzo, G Bianconi, C Altafini
Bioinformatics 23 (13), 1640-1647, 2007
1502007
Orione, a web-based framework for NGS analysis in microbiology
G Cuccuru, M Orsini, A Pinna, A Sbardellati, N Soranzo, A Travaglione, ...
Bioinformatics 30 (13), 1928-1929, 2014
1072014
NCBI BLAST+ integrated into Galaxy
PJA Cock, JM Chilton, B Grüning, JE Johnson, N Soranzo
GigaScience 4, 39, 2015
1062015
From knockouts to networks: establishing direct cause-effect relationships through graph analysis
A Pinna, N Soranzo, A de la Fuente
PLOS ONE 5 (10), e12912, 2010
922010
Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach
P Meyer, T Cokelaer, D Chandran, KH Kim, PR Loh, G Tucker, M Lipson, ...
BMC systems biology 8 (1), 13, 2014
782014
Alterations of a Cellular Cholesterol Metabolism Network Are a Molecular Feature of Obesity-Related Type 2 Diabetes and Cardiovascular Disease
J Ding, LM Reynolds, T Zeller, C Müller, K Lohman, BJ Nicklas, ...
Diabetes 64 (10), 3464-3474, 2015
742015
Practical computational reproducibility in the life sciences
B Grüning, J Chilton, J Köster, R Dale, N Soranzo, M van den Beek, ...
Cell Systems 6 (6), 631-635, 2018
602018
Determining the distance to monotonicity of a biological network: a graph-theoretical approach
G Iacono, F Ramezani, N Soranzo, C Altafini
IET Systems Biology 4 (3), 223-235, 2010
552010
Community-driven data analysis training for biology
B Batut, S Hiltemann, A Bagnacani, D Baker, V Bhardwaj, C Blank, ...
Cell systems 6 (6), 752-758. e1, 2018
502018
Transcriptomic profiles of aging in purified human immune cells
LM Reynolds, J Ding, JR Taylor, K Lohman, N Soranzo, A de la Fuente, ...
BMC genomics 16, 333, 2015
502015
Simulating systems genetics data with SysGenSIM
A Pinna, N Soranzo, I Hoeschele, A de la Fuente
Bioinformatics 27 (17), 2459-2462, 2011
442011
Discerning static and causal interactions in genome-wide reverse engineering problems
M Zampieri, N Soranzo, C Altafini
Bioinformatics 24 (13), 1510-1515, 2008
392008
ERNEST: a toolbox for chemical reaction network theory
N Soranzo, C Altafini
Bioinformatics 25 (21), 2853-2854, 2009
292009
BioBlend.objects: metacomputing with Galaxy
S Leo, L Pireddu, G Cuccuru, L Lianas, N Soranzo, E Afgan, G Zanetti
Bioinformatics 30 (19), 2816-2817, 2014
162014
Origin of co-expression patterns in E. coli and S. cerevisiae emerging from reverse engineering algorithms
M Zampieri, N Soranzo, D Bianchini, C Altafini
PLOS ONE 3 (8), e2981, 2008
152008
A Hadoop-Galaxy adapter for user-friendly and scalable data-intensive bioinformatics in Galaxy
L Pireddu, S Leo, N Soranzo, G Zanetti
Proceedings of the 5th ACM Conference on Bioinformatics, Computational …, 2014
112014
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Articles 1–20