Stavros Makrodimitris
Stavros Makrodimitris
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Unsupervised protein embeddings outperform hand-crafted sequence and structure features at predicting molecular function
A Villegas-Morcillo, S Makrodimitris, RCHJ van Ham, AM Gomez, ...
Bioinformatics 37 (2), 162-170, 2021
A novel computerized tool to stratify risk in carotid atherosclerosis using kinematic features of the arterial wall
A Gastounioti, S Makrodimitris, S Golemati, NPE Kadoglou, CD Liapis, ...
IEEE journal of biomedical and health informatics 19 (3), 1137-1145, 2014
Improving protein function prediction using protein sequence and GO-term similarities
S Makrodimitris, RCHJ van Ham, MJT Reinders
Bioinformatics 35 (7), 1116-1124, 2019
Automatic gene function prediction in the 2020’s
S Makrodimitris, RCHJ Van Ham, MJT Reinders
Genes 11 (11), 1264, 2020
Metric learning on expression data for gene function prediction
S Makrodimitris, MJT Reinders, RCHJ Van Ham
Bioinformatics 36 (4), 1182-1190, 2020
Dynamic clonal hematopoiesis and functional T-cell immunity in a supercentenarian
EB van den Akker, S Makrodimitris, M Hulsman, MH Brugman, T Nikolic, ...
Leukemia 35 (7), 2125-2129, 2021
Is Wikipedia succeeding in reducing gender bias? Assessing changes in gender bias in Wikipedia using word embeddings
KG Schmahl, TJ Viering, S Makrodimitris, AN Jahfari, D Tax, M Loog
Proceedings of the Fourth Workshop on Natural Language Processing and …, 2020
Διερεύνηση της δυνατότητας διάκρισης επικίνδυνων αθηρωματικών πλακών με χρήση χαρακτηριστικών κίνησης
ΣΛ Μακροδημήτρης
The power of universal contextualized protein embeddings in cross-species protein function prediction
I van den Bent, S Makrodimitris, M Reinders
Evolutionary Bioinformatics 17, 11769343211062608, 2021
A thorough analysis of the contribution of experimental, derived and sequence-based predicted protein-protein interactions for functional annotation of proteins
S Makrodimitris, M Reinders, R van Ham
PloS one 15 (11), e0242723, 2020
Sparsity of Protein-Protein Interaction Networks Hinders Function Prediction in Non-Model Species
S Makrodimitris, R van Ham, M Reinders
Cell type deconvolution of methylated cell-free DNA at the resolution of individual reads
P Keukeleire, S Makrodimitris, M Reinders
bioRxiv, 2022
What does that gene do?: Gene function prediction by machine learning with applications to plants
S Makrodimitris
Delft University of Technology, 2021
Hematopoiesis of a Healthy Supercentenarian is Dominated by One Myeloid-Biased Stem Cell Clone for at least 9 Years
S Makrodimitris
Label-Space Dimensionality Reduction and a Similarity-Based Representation for Protein Function Prediction
S Makrodimitris, R van Ham, MJT Reinders
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