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David R. Penas
David R. Penas
Postdoctoral researcher, MBG-CSIC
Dirección de correo verificada de csic.es - Página principal
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Parameter estimation in large-scale systems biology models: a parallel and self-adaptive cooperative strategy
DR Penas, P González, JA Egea, R Doallo, JR Banga
BMC bioinformatics 18 (1), 1-24, 2017
612017
Enhanced parallel differential evolution algorithm for problems in computational systems biology
DR Penas, JR Banga, P González, R Doallo
Applied Soft Computing 33, 86-99, 2015
512015
A cloud-based enhanced differential evolution algorithm for parameter estimation problems in computational systems biology
D Teijeiro, XC Pardo, DR Penas, P González, JR Banga, R Doallo
Cluster Computing 20 (3), 1937-1950, 2017
212017
Parallel metaheuristics in computational biology: An asynchronous cooperative enhanced scatter search method
DR Penas, P González, JA Egea, JR Banga, R Doallo
Procedia Computer Science 51, 630-639, 2015
202015
Using the cloud for parameter estimation problems: comparing Spark vs MPI with a case-study
P Gonzalez, XC Pardo, DR Penas, D Teijeiro, JR Banga, R Doallo
2017 17th IEEE/ACM International Symposium on Cluster, Cloud and Grid …, 2017
152017
A parallel metaheuristic for large mixed-integer dynamic optimization problems, with applications in computational biology
DR Penas, D Henriques, P González, R Doallo, J Saez-Rodriguez, ...
PLoS One 12 (8), e0182186, 2017
142017
Evaluation of parallel differential evolution implementations on MapReduce and Spark
D Teijeiro, XC Pardo, DR Penas, P González, JR Banga, R Doallo
European Conference on Parallel Processing, 397-408, 2016
112016
A parallel differential evolution algorithm for parameter estimation in dynamic models of biological systems
DR Penas, JR Banga, P González, R Doallo
8th International Conference on Practical Applications of Computational …, 2014
102014
A study of semantic proximity between archetype terms based on SNOMED CT relationships
JL Allones, D Penas, M Taboada, D Martinez, S Tellado
Process Support and Knowledge Representation in Health Care, 98-112, 2012
52012
Computational advances in polynomial optimization: RAPOSa, a freely available global solver
B González-Rodríguez, J Ossorio-Castillo, J González-Díaz, ...
Technical Report, 2020
32020
Multimethod optimization in the cloud: A case‐study in systems biology modelling
P González, DR Penas, XC Pardo, JR Banga, R Doallo
Concurrency and Computation: Practice and Experience 30 (12), e4488, 2018
32018
Hybrid parallel multimethod hyperheuristic for mixed-integer dynamic optimization problems in computational systems biology
P González, P Argüeso-Alejandro, DR Penas, XC Pardo, ...
The Journal of Supercomputing 75 (7), 3471-3498, 2019
22019
Enhanced global optimization methods applied to complex fisheries stock assessment models
DR Penas, A Gómez, BB Fraguela, MJ Martín, S Cerviño
Applied Soft Computing 77, 50-66, 2019
22019
A new two‐phase heuristic for a problem of food distribution with compartmentalized trucks and trailers
L Davila‐Pena, D R. Penas, B Casas‐Méndez
International Transactions in Operational Research, 2021
12021
Searching for genetic interactions in complex disease by using distance correlation
F Castro-Prado, J Costas, W González-Manteiga, DR Penas
arXiv preprint arXiv:2012.05285, 2020
12020
Multimethod optimization for reverse engineering of complex biological networks
P González, DR Penas, XC Pardo, JR Banga, R Doallo
Proceedings of the 6th International Workshop on Parallelism in …, 2018
12018
Optimization in computational systems biology via high performance computing techniques
D Rodríguez Penas
12017
A metaheuristic penalty approach for the starting point in nonlinear programming
DR Penas, M Raydan
RAIRO-Operations Research 54 (2), 451-469, 2020
2020
Parameter estimation in large-scale systems biology models: a parallel and self-adaptive cooperative strategy (supplementary information)
DR Penas, P González, JA Egea, R Doallo, JR Banga
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Artículos 1–19