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Thahmina A. Ali
Thahmina A. Ali
Memorial Sloan Kettering Cancer Center, BISC Global, Genentech, Rockefeller University, Weill
Dirección de correo verificada de mskcc.org
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Mapping interactions of microbial metabolites with human G-protein-coupled receptors
DA Colosimo, JA Kohn, PM Luo, FJ Piscotta, SM Han, AJ Pickard, A Rao, ...
Cell host & microbe 26 (2), 273-282. e7, 2019
1212019
miR-1207-3p regulates the androgen receptor in prostate cancer via FNDC1/fibronectin
DK Das, M Naidoo, A Ilboudo, JY Park, T Ali, K Krampis, BD Robinson, ...
Experimental cell research 348 (2), 190-200, 2016
702016
Uncovering the biosynthetic potential of rare metagenomic DNA using co-occurrence network analysis of targeted sequences
V Libis, N Antonovsky, M Zhang, Z Shang, D Montiel, J Maniko, MA Ternei, ...
Nature communications 10 (1), 3848, 2019
562019
Synthetic-bioinformatic natural product antibiotics with diverse modes of action
J Chu, B Koirala, N Forelli, X Vila-Farres, MA Ternei, T Ali, DA Colosimo, ...
Journal of the American Chemical Society 142 (33), 14158-14168, 2020
362020
Bio-Docklets: virtualization containers for single-step execution of NGS pipelines
B Kim, T Ali, C Lijeron, E Afgan, K Krampis
Gigascience, 2017
222017
Biosynthetic Interrogation of Soil Metagenomes Reveals Metamarin, an Uncommon Cyclomarin Congener with Activity against Mycobacterium tuberculosis
L Li, LW MacIntyre, T Ali, R Russo, B Koirala, Y Hernandez, SF Brady
Journal of natural products 84 (4), 1056-1066, 2021
202021
MGS-Fast: Metagenomic shotgun data fast annotation using microbial gene catalogs
SM Brown, H Chen, Y Hao, BP Laungani, TA Ali, C Dong, C Lijeron, ...
GigaScience 8 (4), giz020, 2019
142019
Visual Omics Explorer (VOE): a cross-platform portal for interactive data visualization
B Kim, T Ali, S Hosmer, K Krampis
Bioinformatics 32 (13), 2050-2052, 2016
112016
MicroRNA-1205 regulation of FRYL in prostate cancer
M Naidoo, F Levine, T Gillot, AT Orunmuyi, EO Olapade-Olaopa, T Ali, ...
Frontiers in Cell and Developmental Biology 9, 647485, 2021
72021
Multiscale modeling of the causal functional roles of nsSNPs in a genome-wide association study: application to hypoxia
L Xie, C Ng, T Ali, R Valencia, BL Ferreira, V Xue, M Tanweer, D Zhou, ...
BMC genomics 14, 1-12, 2013
72013
Fibronectin and androgen receptor expression data in prostate cancer obtained from a RNA-sequencing bioinformatics analysis
DK Das, T Ali, K Krampis, OO Ogunwobi
Data in brief 11, 131-135, 2017
62017
Multiplexed functional metagenomic analysis of the infant microbiome identifies effectors of NF-κB, autophagy, and cellular redox state
FJ Piscotta, ST Whitfield, TG Nakashige, AB Estrela, T Ali, SF Brady
Cell Reports 36 (12), 2021
52021
Unraveling function and diversity of bacterial lectins in the human microbiome
LJ Cohen, SM Han, P Lau, D Guisado, Y Liang, TG Nakashige, T Ali, ...
Nature Communications 13 (1), 3101, 2022
42022
miCloud: A Plug-n-Play, Extensible, On-Premises Bioinformatics Cloud for Seamless Execution of Complex Next-Generation Sequencing Data Analysis Pipelines
B Kim, T Ali, C Dong, C Lijeron, R Mazumder, C Wultsch, K Krampis
Journal of Computational Biology 26 (3), 280-284, 2019
12019
The Impact of Genomic Variation on Function (IGVF) Consortium
I Consortium
arXiv preprint arXiv:2307.13708, 2023
2023
Abstract PR09: MicroRNA-1205 regulation of FRYL and aggressive prostate cancer in men of African ancestry
MK Naidoo, F Levine, T Gillot, T Ali, K Krampis, A Orunmuyi, ...
Cancer Epidemiology, Biomarkers & Prevention 29 (6_Supplement_1), PR09-PR09, 2020
2020
Implementation of a Reproducible, Accessible and Transparent RNA-seq Bioinformatics Pipeline within the Galaxy Platform
T Ali, B Kim, C Lijeron, C Dong, C Wultsch, K Krampis
Journal of Computer Science & Systems Biology 11, 195-199, 2018
2018
TED toolkit: a comprehensive approach for convenient transcriptomic profiling as a clinically-oriented application
T Ali, B Kim, C Lijeron, OO Ogunwobi, R Mazumder, K Krampis
PeerJ Preprints, 2017
2017
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