| Parallel changes in gene expression after 20,000 generations of evolution in Escherichia coli TF Cooper, DE Rozen, RE Lenski Proceedings of the National Academy of Sciences 100 (3), 1072-1077, 2003 | 500 | 2003 |
| Negative epistasis between beneficial mutations in an evolving bacterial population AI Khan, DM Dinh, D Schneider, RE Lenski, TF Cooper Science 332 (6034), 1193-1196, 2011 | 486 | 2011 |
| Second-order selection for evolvability in a large Escherichia coli population RJ Woods, JE Barrick, TF Cooper, U Shrestha, MR Kauth, RE Lenski Science 331 (6023), 1433-1436, 2011 | 299 | 2011 |
| Recombination speeds adaptation by reducing competition between beneficial mutations in populations of Escherichia coli TF Cooper PLoS Biol 5 (9), e225, 2007 | 195 | 2007 |
| The causes of epistasis JAGM De Visser, TF Cooper, SF Elena Proceedings of the Royal Society B: Biological Sciences 278 (1725), 3617-3624, 2011 | 188 | 2011 |
| Postsegregational killing does not increase plasmid stability but acts to mediate the exclusion of competing plasmids TF Cooper, JA Heinemann Proceedings of the National Academy of Sciences 97 (23), 12643-12648, 2000 | 157 | 2000 |
| Experimental evolution with E. coli in diverse resource environments. I. Fluctuating environments promote divergence of replicate populations TF Cooper, RE Lenski BMC evolutionary biology 10 (1), 1-10, 2010 | 113 | 2010 |
| Expression profiles reveal parallel evolution of epistatic interactions involving the CRP regulon in Escherichia coli TF Cooper, SK Remold, RE Lenski, D Schneider PLoS Genet 4 (2), e35, 2008 | 92 | 2008 |
| The environment affects epistatic interactions to alter the topology of an empirical fitness landscape KM Flynn, TF Cooper, FBG Moore, VS Cooper PLoS Genet 9 (4), e1003426, 2013 | 71 | 2013 |
| Measuring Selection Coefficients Below 10−3: Method, Questions, and Prospects R Gallet, TF Cooper, SF Elena, T Lenormand Genetics 190 (1), 175-186, 2012 | 64 | 2012 |
| Adaptive evolution of the lactose utilization network in experimentally evolved populations of Escherichia coli S Quan, JCJ Ray, Z Kwota, T Duong, G Balázsi, TF Cooper, RD Monds PLoS Genet 8 (1), e1002444, 2012 | 59 | 2012 |
| A negative relationship between mutation pleiotropy and fitness effect in yeast TF Cooper, EA Ostrowski, M Travisano Evolution: International Journal of Organic Evolution 61 (6), 1495-1499, 2007 | 54 | 2007 |
| Parasites and mutational load: an experimental test of a pluralistic theory for the evolution of sex TF Cooper, RE Lenski, SF Elena Proceedings of the Royal Society B: Biological Sciences 272 (1560), 311-317, 2005 | 51 | 2005 |
| Identification and dynamics of a beneficial mutation in a long-term evolution experiment with Escherichia coli MT Stanek, TF Cooper, RE Lenski BMC evolutionary biology 9 (1), 1-13, 2009 | 49 | 2009 |
| Effect of random and hub gene disruptions on environmental and mutational robustness in Escherichia coli TF Cooper, AP Morby, A Gunn, D Schneider Bmc Genomics 7 (1), 1-11, 2006 | 49 | 2006 |
| Systematic perturbation of cytoskeletal function reveals a linear scaling relationship between cell geometry and fitness RD Monds, TK Lee, A Colavin, T Ursell, S Quan, TF Cooper, KC Huang Cell reports 9 (4), 1528-1537, 2014 | 48 | 2014 |
| Molecular and genome evolution D Graur Sinauer associates, 2016 | 47 | 2016 |
| Evolution of stable ecosystems in populations of digital organisms TF Cooper, C Ofria Artificial Life VIII: Proceedings of the Eighth International Conference on …, 2003 | 47 | 2003 |
| The distribution of fitness effects of new beneficial mutations in Pseudomonas fluorescens MJ McDonald, TF Cooper, HJE Beaumont, PB Rainey Biology letters 7 (1), 98-100, 2011 | 44 | 2011 |
| Selection for plasmid post–segregational killing depends on multiple infection: evidence for the selection of more virulent parasites through parasite–level competition TF Cooper, JA Heinemann Proceedings of the Royal Society B: Biological Sciences 272 (1561), 403-410, 2005 | 44 | 2005 |
