Jose Davila-Velderrain
Jose Davila-Velderrain
MIT and Broad Institute of MIT and Harvard
Verified email at mit.edu - Homepage
Title
Cited by
Cited by
Year
Single-cell transcriptomic analysis of Alzheimer’s disease
H Mathys, J Davila-Velderrain, Z Peng, F Gao, S Mohammadi, JZ Young, ...
Nature 570 (7761), 332-337, 2019
5192019
Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use
M Liu, Y Jiang, R Wedow, Y Li, DM Brazel, F Chen, G Datta, ...
Nature genetics 51 (2), 237-244, 2019
4592019
Expanded encyclopaedias of DNA elements in the human and mouse genomes
JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ...
Nature 583 (7818), 699-710, 2020
1552020
Modeling the epigenetic attractors landscape: toward a post-genomic mechanistic understanding of development
J Davila-Velderrain, JC Martinez-Garcia, ER Alvarez-Buylla
Frontiers in genetics 6, 160, 2015
602015
Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration
M Menon, S Mohammadi, J Davila-Velderrain, BA Goods, TD Cadwell, ...
Nature communications 10 (1), 1-9, 2019
592019
Reconstruction of the human blood–brain barrier in vitro reveals a pathogenic mechanism of APOE4 in pericytes
JW Blanchard, M Bula, J Davila-Velderrain, LA Akay, L Zhu, A Frank, ...
Nature Medicine 26 (6), 952-963, 2020
422020
XAANTAL2 (AGL14) is an important component of the complex gene regulatory network that underlies Arabidopsis shoot apical meristem transitions
RV Pérez-Ruiz, B García-Ponce, N Marsch-Martínez, ...
Molecular plant 8 (5), 796-813, 2015
422015
Gene regulatory network models for floral organ determination
E Azpeitia, J Davila-Velderrain, C Villarreal, ER Alvarez-Buylla
Flower Development, 441-469, 2014
302014
Molecular evolution constraints in the floral organ specification gene regulatory network module across 18 angiosperm genomes
J Davila-Velderrain, A Servin-Marquez, ER Alvarez-Buylla
Molecular biology and evolution 31 (3), 560-573, 2014
292014
Reconstruction of cell-type-specific interactomes at single-cell resolution
S Mohammadi, J Davila-Velderrain, M Kellis
Cell systems 9 (6), 559-568. e4, 2019
262019
Reshaping the epigenetic landscape during early flower development: induction of attractor transitions by relative differences in gene decay rates
J Davila-Velderrain, C Villarreal, ER Alvarez-Buylla
BMC systems biology 9 (1), 1-14, 2015
252015
Cell type-specific transcriptomics reveals that mutant huntingtin leads to mitochondrial RNA release and neuronal innate immune activation
H Lee, RJ Fenster, SS Pineda, WS Gibbs, S Mohammadi, ...
Neuron 107 (5), 891-908. e8, 2020
242020
Comparison of gene expression profiles between pansensitive and multidrug-resistant strains of Mycobacterium tuberculosis
K Penuelas-Urquides, L Gonzalez-Escalante, L Villarreal-Trevino, ...
Current microbiology 67 (3), 362-371, 2013
192013
Gene regulatory network underlying the immortalization of epithelial cells
LF Méndez-López, J Davila-Velderrain, E Domínguez-Hüttinger, ...
BMC systems biology 11 (1), 1-15, 2017
182017
Pervasive presence of transgenes and glyphosate in maize-derived food in Mexico
E González-Ortega, A Piñeyro-Nelson, E Gómez-Hernández, ...
Agroecology and sustainable food systems 41 (9-10), 1146-1161, 2017
172017
Perspectives on ENCODE
MP Snyder, TR Gingeras, JE Moore, Z Weng, MB Gerstein, B Ren, ...
Nature 583 (7818), 693-698, 2020
162020
Mapping the epigenomic and transcriptomic interplay during memory formation and recall in the hippocampal engram ensemble
A Marco, HS Meharena, V Dileep, RM Raju, J Davila-Velderrain, ...
Nature Neuroscience 23 (12), 1606-1617, 2020
142020
Dynamic network modelling to understand flowering transition and floral patterning
J Davila-Velderrain, JC Martinez-Garcia, ER Alvarez-Buylla
Journal of experimental botany 67 (9), 2565-2572, 2016
142016
Systems biology approaches to development beyond bioinformatics: nonlinear mechanistic models using plant systems
ER Álvarez-Buylla, J Dávila-Velderrain, JC Martínez-García
BioScience 66 (5), 371-383, 2016
132016
RiVIERA-MT: A Bayesian model to infer risk variants in related traits using summary statistics and functional genomic annotations
Y Li, M Kellis
bioRxiv, 059345, 2016
10*2016
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Articles 1–20