idoia ochoa
TítuloCitado porAño
QVZ: lossy compression of quality values
G Malysa, M Hernaez, I Ochoa, M Rao, K Ganesan, T Weissman
Bioinformatics 31 (19), 3122-3129, 2015
532015
QualComp: a new lossy compressor for quality scores based on rate distortion theory
I Ochoa, H Asnani, D Bharadia, M Chowdhury, T Weissman, G Yona
BMC bioinformatics 14 (1), 187, 2013
522013
Effect of lossy compression of quality scores on variant calling
I Ochoa, M Hernaez, R Goldfeder, T Weissman, E Ashley
Briefings in bioinformatics 18 (2), 183-194, 2017
512017
Reference based genome compression
BG Chern, I Ochoa, A Manolakos, A No, K Venkat, T Weissman
2012 IEEE Information Theory Workshop, 427-431, 2012
272012
iDoComp: a compression scheme for assembled genomes
I Ochoa, M Hernaez, T Weissman
Bioinformatics 31 (5), 626-633, 2015
262015
FaStore: a space-saving solution for raw sequencing data
Ł Roguski, I Ochoa, M Hernaez, S Deorowicz
Bioinformatics 34 (16), 2748-2756, 2018
212018
CaMoDi: a new method for cancer module discovery
A Manolakos, I Ochoa, K Venkat, AJ Goldsmith, O Gevaert
BMC genomics 15 (10), S8, 2014
162014
SPRING: a next-generation compressor for FASTQ data
S Chandak, K Tatwawadi, I Ochoa, M Hernaez, T Weissman
Bioinformatics 35 (15), 2674-2676, 2019
142019
GTRAC: fast retrieval from compressed collections of genomic variants
K Tatwawadi, M Hernaez, I Ochoa, T Weissman
Bioinformatics 32 (17), i479-i486, 2016
122016
A cluster-based approach to compression of quality scores
M Hernaez, I Ochoa, T Weissman
2016 Data Compression Conference (DCC), 261-270, 2016
122016
Aligned genomic data compression via improved modeling
I Ochoa, M Hernaez, T Weissman
Journal of bioinformatics and computational biology 12 (06), 1442002, 2014
122014
Lossy compression of quality values via rate distortion theory
H Asnani, D Bharadia, M Chowdhury, I Ochoa, I Sharon, T Weissman
arXiv preprint arXiv:1207.5184, 2012
92012
LDPC codes for non-uniform memoryless sources and unequal energy allocation
I Ochoa, PM Crespo, M Hernaez
IEEE communications letters 14 (9), 794-796, 2010
92010
An introduction to MPEG-G, the new ISO standard for genomic information representation
C Albert, T Paridaens, J Voges, D Naro, JJ Ahmad, M Ravasi, D Renzi, ...
bioRxiv, 426353, 2018
72018
Compression schemes for similarity queries
I Ochoa, A Ingber, T Weissman
2014 Data Compression Conference, 332-341, 2014
62014
Genomic Data Compression
M Hernaez, D Pavlichin, T Weissman, I Ochoa
Annual Review of Biomedical Data Science 2, 19-37, 2019
52019
GeneComp, a new reference-based compressor for SAM files
R Long, M Hernaez, I Ochoa, T Weissman
2017 Data Compression Conference (DCC), 330-339, 2017
52017
Efficient similarity queries via lossy compression
I Ochoa, A Ingber, T Weissman
2013 51st Annual Allerton Conference on Communication, Control, and …, 2013
52013
Denoising of quality scores for boosted inference and reduced storage
I Ochoa, M Hernaez, R Goldfeder, T Weissman, E Ashley
2016 Data Compression Conference (DCC), 251-260, 2016
32016
AliCo: a new efficient representation for SAM files
I Ochoa, H Li, F Baumgarte, C Hergenrother, J Voges, M Hernaez
2019 Data Compression Conference (DCC), 93-102, 2019
22019
El sistema no puede realizar la operación en estos momentos. Inténtalo de nuevo más tarde.
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