| The microbiome of aseptically collected human breast tissue in benign and malignant disease TJ Hieken, J Chen, TL Hoskin, M Walther-Antonio, S Johnson, S Ramaker, ... Scientific reports 6 (1), 30751, 2016 | 365 | 2016 |
| Shifts in the fecal microbiota associated with adenomatous polyps VL Hale, J Chen, S Johnson, SC Harrington, TC Yab, TC Smyrk, H Nelson, ... Cancer Epidemiology, Biomarkers & Prevention 26 (1), 85-94, 2017 | 176 | 2017 |
| A comprehensive analysis of breast cancer microbiota and host gene expression KJ Thompson, JN Ingle, X Tang, N Chia, PR Jeraldo, MR Walther-Antonio, ... PloS one 12 (11), e0188873, 2017 | 134 | 2017 |
| Serine proteases as luminal mediators of intestinal barrier dysfunction and symptom severity in IBS S Edogawa, AL Edwinson, SA Peters, LL Chikkamenahalli, W Sundt, ... Gut 69 (1), 62-73, 2020 | 82 | 2020 |
| Sex differences in NSAID-induced perturbation of human intestinal barrier function and microbiota S Edogawa, SA Peters, GD Jenkins, SV Gurunathan, WJ Sundt, ... The FASEB Journal 32 (12), 6615, 2018 | 52 | 2018 |
| A better sequence-read simulator program for metagenomics S Johnson, B Trost, JR Long, V Pittet, A Kusalik BMC bioinformatics 15 (9), 1-10, 2014 | 46 | 2014 |
| Predictive modeling of microbiome data using a phylogeny-regularized generalized linear mixed model J Xiao, L Chen, S Johnson, Y Yu, X Zhang, J Chen Frontiers in microbiology 9, 1391, 2018 | 45 | 2018 |
| A decreased abundance of clostridia characterizes the gut microbiota in eosinophilic esophagitis PC Kashyap, S Johnson, DM Geno, HR Lekatz, C Lavey, JA Alexander, ... Physiological reports 7 (20), e14261, 2019 | 31 | 2019 |
| Comparison of biochemical, microbial and mucosal mRNA expression in bile acid diarrhoea and irritable bowel syndrome with diarrhoea M Camilleri, P Carlson, J BouSaba, S McKinzie, P Vijayvargiya, Y Magnus, ... Gut 72 (1), 54-65, 2023 | 20 | 2023 |
| Hybrid-denovo: a de novo OTU-picking pipeline integrating single-end and paired-end 16S sequence tags X Chen, S Johnson, P Jeraldo, J Wang, N Chia, JPA Kocher, J Chen Gigascience 7 (3), gix129, 2018 | 20 | 2018 |
| Systematic bias introduced by genomic DNA template dilution in 16S rRNA gene-targeted microbiota profiling in human stool homogenates F Multinu, SC Harrington, J Chen, PR Jeraldo, S Johnson, N Chia, ... Msphere 3 (2), 10.1128/msphere. 00560-17, 2018 | 18* | 2018 |
| Predominance of Atopobium vaginae at midtrimester: a potential indicator of preterm birth risk in a Nigerian cohort NM Odogwu, J Chen, CA Onebunne, P Jeraldo, L Yang, S Johnson, ... Msphere 6 (1), 10.1128/msphere. 01261-20, 2021 | 16 | 2021 |
| Potential Role of Inflammation-Promoting Biliary Microbiome in Primary Sclerosing Cholangitis and Cholangiocarcinoma K Miyabe, V Chandrasekhara, N Wongjarupong, J Chen, L Yang, ... Cancers 14 (9), 2120, 2022 | 13 | 2022 |
| The breast tissue microbiome, stroma, immune cells and breast cancer TJ Hieken, J Chen, B Chen, S Johnson, TL Hoskin, AC Degnim, ... Neoplasia 27, 100786, 2022 | 11 | 2022 |
| Next-Generation Sequencing of CYP2C19 in Stent Thrombosis: Implications for Clopidogrel Pharmacogenomics JA Morales-Rosado, K Goel, L Zhang, A Åkerblom, S Baheti, JL Black, ... Cardiovascular drugs and therapy 35, 549-559, 2021 | 8 | 2021 |
| Comparative transcriptomic analysis of Staphylococcus aureus associated with periprosthetic joint infection under in vivo and in vitro conditions T Le Masters, S Johnson, PR Jeraldo, KE Greenwood-Quaintance, ... The Journal of Molecular Diagnostics 23 (8), 986-999, 2021 | 7 | 2021 |
| Transcriptomic analysis of Streptococcus agalactiae periprosthetic joint infection HK Cho, T Masters, KE Greenwood‐Quaintance, S Johnson, PR Jeraldo, ... MicrobiologyOpen 10 (6), e1256, 2021 | 6 | 2021 |
| Effect of rapid colonic transit on stool microbiome and short-chain fatty acids in diarrhoea-predominant irritable bowel syndrome J BouSaba, T Zheng, S Dilmaghani, S Johnson, J Chen, M Camilleri Gut 73 (2), 375-376, 2024 | 2 | 2024 |
| Genesis of fecal floatation is causally linked to gut microbial colonization in mice SMM Aalam, DN Crasta, P Roy, AL Miller, SI Gamb, S Johnson, LM Till, ... Scientific reports 12 (1), 18109, 2022 | 2 | 2022 |
| Adjustable intragastric balloon leads to significant improvement in obesity-related lipidome and fecal microbiome profiles: a proof of concept study: Intragastric balloon … H Hussan, BKA Dayyeh, J Chen, S Johnson, K Riedl, EM Grainger, ... Clinical and Translational Gastroenterology, 10.14309, 2022 | 2 | 2022 |
