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Sarah J. Berkemer
Sarah J. Berkemer
AMIBio, LIX, Ecole Polytechnique, Paris, France
Dirección de correo verificada de lix.polytechnique.fr
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A new analysis of archaea–bacteria domain separation: variable phylogenetic distance and the tempo of early evolution
SJ Berkemer, SE McGlynn
Molecular biology and evolution 37 (8), 2332-2340, 2020
392020
Orthologs, turn-over, and remolding of tRNAs in primates and fruit flies
CA Velandia-Huerto, SJ Berkemer, A Hoffmann, N Retzlaff, ...
BMC genomics 17, 1-15, 2016
212016
Identification of RNA 3´ ends and termination sites in Haloferax volcanii
SJ Berkemer, LK Maier, F Amman, SH Bernhart, J Wörtz, P Märkle, ...
RNA biology 17 (5), 663-676, 2020
142020
Splicing endonuclease is an important player in rRNA and tRNA maturation in archaea
TS Schwarz, SJ Berkemer, SH Bernhart, M Weiß, S Ferreira-Cerca, ...
Frontiers in microbiology 11, 594838, 2020
122020
Compositional properties of alignments
SJ Berkemer, C Höner zu Siederdissen, PF Stadler
Mathematics in Computer Science 15 (4), 609-630, 2021
92021
Algebraic dynamic programming on trees
SJ Berkemer, C Höner zu Siederdissen, PF Stadler
Algorithms 10 (4), 135, 2017
82017
Automated design of dynamic programming schemes for RNA folding with pseudoknots
B Marchand, S Will, SJ Berkemer, Y Ponty, L Bulteau
Algorithms for Molecular Biology 18 (1), 18, 2023
72023
The Thermosynechococcus genus: wide environmental distribution, but a highly conserved genomic core
P Prondzinsky, SJ Berkemer, LM Ward, SE McGlynn
Microbes and environments 36 (2), ME20138, 2021
62021
Convexity deficit of benzenoids
N Bašić, SJ Berkemer, J Fallmann, PW Fowler, T Gatter, T Pisanski, ...
Croatica chemica acta 92 (4), 457-466, 2019
42019
Smore: Synteny modulator of repetitive elements
SJ Berkemer, A Hoffmann, CRA Murray, PF Stadler
Life 7 (4), 42, 2017
42017
Street name data as a reflection of migration and settlement history
SJ Berkemer, PF Stadler
Urban Science 4 (4), 74, 2020
32020
Spiders can be recognized by counting their legs
SJ Berkemer, RRC Chaves, A Fritz, M Hellmuth, M Hernandez-Rosales, ...
Mathematics in Computer Science 9 (4), 437-441, 2015
32015
Processed small RNAs in Archaea and BHB elements
SJ Berkemer, CH zu Siederdissen, F Amman, A Wintsche, S Will, ...
32015
Infrared: a declarative tree decomposition-powered framework for bioinformatics
HT Yao, B Marchand, SJ Berkemer, Y Ponty, S Will
Algorithms for Molecular Biology 19 (1), 13, 2024
12024
Unbiased Map of Transcription Termination Sites in Haloferax volcanii reveals manifold termination patterns
SJ Berkemer, LK Maier, F Amman, SH Bernhart, J Wörtz, P Märkle, ...
bioRxiv, 748780, 2019
12019
Comparative Detection of Processed Small RNAs in Archaea.
CH zu Siederdissen, S Berkemer, F Amman, A Wintsche, S Will, ...
IWBBIO, 286-297, 2014
12014
City composition and accessibility statistics in and around Paris
MO Thaury, S Genet, L Maurice, P Tubaro, SJ Berkemer
Frontiers in Big Data 7, 2024
2024
Is Paris a good example for a X-minute city?
SJ Berkemer, S Genet, L Maurice, MO Thaury, P Tubaro
FRCCS 2023, 2023
2023
Toward a Systematic Assessment of Sex Differences in Cystic Fibrosis
C Gärtner, J Fallmann, PF Stadler, T Kaiser, SJ Berkemer
Journal of Personalized Medicine 13 (6), 924, 2023
2023
Towards dynamic programming on generalized data structures and applications of dynamic programming in bioinformatics
S Berkemer
Max Planck Institute for Mathematics in the Sciences, Max Planck Society, 2020
2020
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Artículos 1–20