James C Phillips
James C Phillips
Senior Research Programmer, National Center for Supercomputing Applications, University of Illinois
Verified email at illinois.edu - Homepage
Title
Cited by
Cited by
Year
Scalable molecular dynamics with NAMD
JC Phillips, R Braun, W Wang, J Gumbart, E Tajkhorshid, E Villa, C Chipot, ...
Journal of computational chemistry 26 (16), 1781-1802, 2005
158342005
NAMD2: greater scalability for parallel molecular dynamics
L Kalé, R Skeel, M Bhandarkar, R Brunner, A Gursoy, N Krawetz, ...
Journal of Computational Physics 151 (1), 283-312, 1999
27491999
GPU computing
JD Owens, M Houston, D Luebke, S Green, JE Stone, JC Phillips
Proceedings of the IEEE 96 (5), 879-899, 2008
25972008
Accelerating molecular modeling applications with graphics processors
JE Stone, JC Phillips, PL Freddolino, DJ Hardy, LG Trabuco, K Schulten
Journal of computational chemistry 28 (16), 2618-2640, 2007
8692007
NAMD: Biomolecular simulation on thousands of processors
JC Phillips, G Zheng, S Kumar, LV Kalé
SC'02: Proceedings of the 2002 ACM/IEEE Conference on Supercomputing, 36-36, 2002
3332002
Scalable molecular dynamics on CPU and GPU architectures with NAMD
JC Phillips, DJ Hardy, JDC Maia, JE Stone, JV Ribeiro, RC Bernardi, ...
The Journal of chemical physics 153 (4), 044130, 2020
3172020
GPU clusters for high-performance computing
VV Kindratenko, JJ Enos, G Shi, MT Showerman, GW Arnold, JE Stone, ...
2009 IEEE International Conference on Cluster Computing and Workshops, 1-8, 2009
3002009
Adapting a message-driven parallel application to GPU-accelerated clusters
JC Phillips, JE Stone, K Schulten
SC'08: Proceedings of the 2008 ACM/IEEE Conference on Supercomputing, 1-9, 2008
2332008
High-performance scalable molecular dynamics simulations of a polarizable force field based on classical Drude oscillators in NAMD
W Jiang, DJ Hardy, JC Phillips, AD MacKerell Jr, K Schulten, B Roux
The journal of physical chemistry letters 2 (2), 87-92, 2011
2302011
Predicting the structure of apolipoprotein AI in reconstituted high-density lipoprotein disks
JC Phillips, W Wriggers, Z Li, A Jonas, K Schulten
Biophysical Journal 73 (5), 2337-2346, 1997
1871997
Molecular dynamics simulations of discoidal bilayers assembled from truncated human lipoproteins
AY Shih, IG Denisov, JC Phillips, SG Sligar, K Schulten
Biophysical journal 88 (1), 548-556, 2005
1482005
Scalable molecular dynamics with NAMD on the IBM Blue Gene/L system
S Kumar, C Huang, G Zheng, E Bohm, A Bhatele, JC Phillips, H Yu, ...
IBM Journal of Research and Development 52 (1.2), 177-188, 2008
1292008
Molecular dynamics study of bacteriorhodopsin and the purple membrane
J Baudry, E Tajkhorshid, F Molnar, J Phillips, K Schulten
The Journal of Physical Chemistry B 105 (5), 905-918, 2001
1242001
Parallel generalized Born implicit solvent calculations with NAMD
DE Tanner, KY Chan, JC Phillips, K Schulten
Journal of chemical theory and computation 7 (11), 3635-3642, 2011
1202011
Overcoming scaling challenges in biomolecular simulations across multiple platforms
A Bhatele, S Kumar, C Mei, JC Phillips, G Zheng, LV Kale
2008 IEEE International Symposium on Parallel and Distributed Processing, 1-12, 2008
1132008
QwikMD—integrative molecular dynamics toolkit for novices and experts
JV Ribeiro, RC Bernardi, T Rudack, JE Stone, JC Phillips, PL Freddolino, ...
Scientific reports 6 (1), 1-14, 2016
1072016
Generalized scalable multiple copy algorithms for molecular dynamics simulations in NAMD
W Jiang, JC Phillips, L Huang, M Fajer, Y Meng, JC Gumbart, Y Luo, ...
Computer physics communications 185 (3), 908-916, 2014
1072014
Quantum dynamics of the femtosecond photoisomerization of retinal in bacteriorhodopsin
M Ben-Nun, F Molnar, H Lu, JC Phillips, TJ Martínez, K Schulten
Faraday Discussions 110, 447-462, 1998
1021998
Kale L and Schulten K
JC Phillips, R Braun, W Wang, J Gumbart, E Tajkhorshid, E Villa, C Chipot, ...
J. Comput. Chem. 2005, 26, 2005
1002005
NAMD goes quantum: an integrative suite for hybrid simulations
MCR Melo, RC Bernardi, T Rudack, M Scheurer, C Riplinger, JC Phillips, ...
Nature methods 15 (5), 351-354, 2018
902018
The system can't perform the operation now. Try again later.
Articles 1–20