| Tumour-associated and non-tumour-associated microbiota in colorectal cancer B Flemer, DB Lynch, JMR Brown, IB Jeffery, FJ Ryan, MJ Claesson, ... Gut 66 (4), 633-643, 2017 | 683 | 2017 |
| Regulation of prefrontal cortex myelination by the microbiota AE Hoban, RM Stilling, FJ Ryan, F Shanahan, TG Dinan, MJ Claesson, ... Translational psychiatry 6 (4), e774-e774, 2016 | 558 | 2016 |
| The human gut virome is highly diverse, stable, and individual specific AN Shkoporov, AG Clooney, TDS Sutton, FJ Ryan, KM Daly, JA Nolan, ... Cell host & microbe 26 (4), 527-541. e5, 2019 | 497 | 2019 |
| Whole-virome analysis sheds light on viral dark matter in inflammatory bowel disease AG Clooney, TDS Sutton, AN Shkoporov, RK Holohan, KM Daly, ... Cell host & microbe 26 (6), 764-778. e5, 2019 | 318 | 2019 |
| Biology and taxonomy of crAss-like bacteriophages, the most abundant virus in the human gut E Guerin, A Shkoporov, SR Stockdale, AG Clooney, FJ Ryan, TDS Sutton, ... Cell host & microbe 24 (5), 653-664. e6, 2018 | 251 | 2018 |
| Microbes & neurodevelopment–Absence of microbiota during early life increases activity-related transcriptional pathways in the amygdala RM Stilling, FJ Ryan, AE Hoban, F Shanahan, G Clarke, MJ Claesson, ... Brain, behavior, and immunity 50, 209-220, 2015 | 239 | 2015 |
| Colonic microbiota is associated with inflammation and host epigenomic alterations in inflammatory bowel disease FJ Ryan, AM Ahern, RS Fitzgerald, EJ Laserna-Mendieta, EM Power, ... Nature communications 11 (1), 1512, 2020 | 207 | 2020 |
| Long-term perturbation of the peripheral immune system months after SARS-CoV-2 infection FJ Ryan, CM Hope, MG Masavuli, MA Lynn, ZA Mekonnen, AEL Yeow, ... BMC medicine 20, 1-23, 2022 | 184 | 2022 |
| Ranking microbiome variance in inflammatory bowel disease: a large longitudinal intercontinental study AG Clooney, J Eckenberger, E Laserna-Mendieta, KA Sexton, ... Gut 70 (3), 499-510, 2021 | 167 | 2021 |
| Reproducible protocols for metagenomic analysis of human faecal phageomes AN Shkoporov, FJ Ryan, LA Draper, A Forde, SR Stockdale, KM Daly, ... Microbiome 6, 1-17, 2018 | 167 | 2018 |
| SPINGO: a rapid species-classifier for microbial amplicon sequences G Allard, FJ Ryan, IB Jeffery, MJ Claesson BMC bioinformatics 16, 1-8, 2015 | 159 | 2015 |
| Long-term colonisation with donor bacteriophages following successful faecal microbial transplantation LA Draper, FJ Ryan, MK Smith, J Jalanka, E Mattila, PA Arkkila, RP Ross, ... Microbiome 6, 1-9, 2018 | 130 | 2018 |
| Choice of assembly software has a critical impact on virome characterisation TDS Sutton, AG Clooney, FJ Ryan, RP Ross, C Hill Microbiome 7, 1-15, 2019 | 128 | 2019 |
| Viromes of one year old infants reveal the impact of birth mode on microbiome diversity A McCann, FJ Ryan, SR Stockdale, M Dalmasso, T Blake, CA Ryan, ... PeerJ 6, e4694, 2018 | 113 | 2018 |
| Social interaction-induced activation of RNA splicing in the amygdala of microbiome-deficient mice RM Stilling, GM Moloney, FJ Ryan, AE Hoban, TFS Bastiaanssen, ... Elife 7, e33070, 2018 | 89 | 2018 |
| Short-term consumption of a high-fat diet increases host susceptibility to Listeria monocytogenes infection V Las Heras, AG Clooney, FJ Ryan, R Cabrera-Rubio, PG Casey, ... Microbiome 7, 1-12, 2019 | 70 | 2019 |
| Autochthonous faecal viral transfer (FVT) impacts the murine microbiome after antibiotic perturbation LA Draper, FJ Ryan, M Dalmasso, PG Casey, A McCann, V Velayudhan, ... BMC biology 18, 1-14, 2020 | 49 | 2020 |
| Application of machine learning techniques for creating urban microbial fingerprints FJ Ryan Biology direct 14, 1-13, 2019 | 39 | 2019 |
| The composition of the gut microbiota following early-life antibiotic exposure affects host health and longevity in later life MA Lynn, G Eden, FJ Ryan, J Bensalem, X Wang, SJ Blake, JM Choo, ... Cell Reports 36 (8), 2021 | 35 | 2021 |
| Changes in the composition of the gut microbiota and the blood transcriptome in preterm infants at less than 29 weeks gestation diagnosed with bronchopulmonary dysplasia FJ Ryan, DP Drew, C Douglas, LEX Leong, M Moldovan, M Lynn, N Fink, ... Msystems 4 (5), 10.1128/msystems. 00484-19, 2019 | 27 | 2019 |
