Raoul JP Bonnal
Raoul JP Bonnal
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Transcriptional landscape of human tissue lymphocytes unveils uniqueness of tumor-infiltrating T regulatory cells
M De Simone, A Arrigoni, G Rossetti, P Gruarin, V Ranzani, C Politano, ...
Immunity 45 (5), 1135-1147, 2016
The long intergenic noncoding RNA landscape of human lymphocytes highlights the regulation of T cell differentiation by linc-MAF-4
V Ranzani, G Rossetti, I Panzeri, A Arrigoni, RJP Bonnal, S Curti, ...
Nature immunology 16 (3), 318, 2015
Whole-genome pyrosequencing of an epidemic multidrug-resistant Acinetobacter baumannii strain belonging to the European clone II group
M Iacono, L Villa, D Fortini, R Bordoni, F Imperi, RJP Bonnal, ...
Antimicrobial agents and chemotherapy 52 (7), 2616-2625, 2008
Distinct microRNA signatures in human lymphocyte subsets and enforcement of the naive state in CD4+ T cells by the microRNA miR-125b
RL Rossi, G Rossetti, L Wenandy, S Curti, A Ripamonti, RJP Bonnal, ...
Nature immunology 12 (8), 796, 2011
A transcriptional sketch of a primary human breast cancer by 454 deep sequencing
A Guffanti, M Iacono, P Pelucchi, N Kim, G SoldÓ, LJ Croft, RJ Taft, E Rizzi, ...
BMC genomics 10 (1), 163, 2009
A transcriptional sketch of a primary human breast cancer by 454 deep sequencing. BMC Highly accessed paper
A Guffanti, M Iacono, P Pelucchi, N Kim, G Solda, L Croft, R Taft, E Rizzi, ...
BioRuby: bioinformatics software for the Ruby programming language
N Goto, P Prins, M Nakao, R Bonnal, J Aerts, T Katayama
Bioinformatics 26 (20), 2617-2619, 2010
Complete mitochondrial genome sequence of the Tyrolean Iceman
L Ermini, C Olivieri, E Rizzi, G Corti, R Bonnal, P Soares, S Luciani, ...
Current Biology 18 (21), 1687-1693, 2008
Role of microRNAs and long‐non‐coding RNAs in CD4+ T‐cell differentiation
M Pagani, G Rossetti, I Panzeri, P de Candia, RJP Bonnal, RL Rossi, ...
Immunological reviews 253 (1), 82-96, 2013
Bio-samtools: Ruby bindings for SAMtools, a library for accessing BAM files containing high-throughput sequence alignments
RH Ramirez-Gonzalez, R Bonnal, M Caccamo, D MacLean
Source code for biology and medicine 7 (1), 6, 2012
RSSsite: a reference database and prediction tool for the identification of cryptic Recombination Signal Sequences in human and murine genomes
I Merelli, A Guffanti, M Fabbri, A Cocito, L Furia, U Grazini, RJ Bonnal, ...
Nucleic acids research 38 (suppl_2), W262-W267, 2010
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains
T Katayama, MD Wilkinson, KF Aoki-Kinoshita, S Kawashima, ...
Journal of biomedical semantics 5 (1), 5, 2014
Identification of new autoantigens by protein array indicates a role for IL4 neutralization in autoimmune hepatitis
C Zingaretti, M Arig˛, A Cardaci, M Moro, M Crosti, A Sinisi, E Sugliano, ...
Molecular & Cellular Proteomics 11 (12), 1885-1897, 2012
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows
T Katayama, K Arakawa, M Nakao, K Ono, KF Aoki-Kinoshita, ...
Journal of biomedical semantics 1 (1), 8, 2010
Community-driven development for computational biology at Sprints, Hackathons and Codefests
S M÷ller, E Afgan, M Banck, RJP Bonnal, T Booth, J Chilton, PJA Cock, ...
BMC bioinformatics 15 (S14), S7, 2014
Strategies for comparing gene expression profiles from different microarray platforms: Application to a case–control experiment
M Severgnini, S Bicciato, E Mangano, F Scarlatti, A Mezzelani, M Mattioli, ...
Analytical biochemistry 353 (1), 43-56, 2006
De novo transcriptome profiling of highly purified human lymphocytes primary cells
RJP Bonnal, V Ranzani, A Arrigoni, S Curti, I Panzeri, P Gruarin, ...
Scientific data 2, 150051, 2015
Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics
RJP Bonnal, J Aerts, G Githinji, N Goto, D MacLean, CA Miller, H Mishima, ...
Bioinformatics 28 (7), 1035-1037, 2012
Complete genome sequence of a serotype 11A, ST62 Streptococcus pneumoniaeinvasive isolate
R Camilli, RJP Bonnal, M Del Grosso, M Iacono, G Corti, E Rizzi, ...
BMC microbiology 11 (1), 25, 2011
Analysis RNA-seq and Noncoding RNA
A Arrigoni, V Ranzani, G Rossetti, I Panzeri, S Abrignani, RJP Bonnal, ...
Polycomb Group Proteins, 125-135, 2016
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