| Whole-genome analyses resolve early branches in the tree of life of modern birds ED Jarvis, S Mirarab, AJ Aberer, B Li, P Houde, C Li, SYW Ho, ... Science 346 (6215), 1320-1331, 2014 | 1643 | 2014 |
| The genome of a songbird WC Warren, DF Clayton, H Ellegren, AP Arnold, LDW Hillier, A Künstner, ... Nature 464 (7289), 757-762, 2010 | 880 | 2010 |
| The genomic landscape of species divergence in Ficedula flycatchers H Ellegren, L Smeds, R Burri, PI Olason, N Backström, T Kawakami, ... Nature 491 (7426), 756-760, 2012 | 617 | 2012 |
| Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers R Burri, A Nater, T Kawakami, CF Mugal, PI Olason, L Smeds, A Suh, ... Genome research 25 (11), 1656-1665, 2015 | 342 | 2015 |
| ConDeTri-a content dependent read trimmer for Illumina data L Smeds, A Künstner PloS one 6 (10), e26314, 2011 | 242 | 2011 |
| The dynamics of incomplete lineage sorting across the ancient adaptive radiation of neoavian birds A Suh, L Smeds, H Ellegren PLoS biology 13 (8), e1002224, 2015 | 215 | 2015 |
| A high‐density linkage map enables a second‐generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution T Kawakami, L Smeds, N Backström, A Husby, A Qvarnström, CF Mugal, ... Molecular ecology 23 (16), 4035-4058, 2014 | 196 | 2014 |
| Temporal dynamics of avian populations during Pleistocene revealed by whole-genome sequences K Nadachowska-Brzyska, C Li, L Smeds, G Zhang, H Ellegren Current Biology 25 (10), 1375-1380, 2015 | 182 | 2015 |
| PSMC analysis of effective population sizes in molecular ecology and its application to black‐and‐white Ficedula flycatchers K Nadachowska‐Brzyska, R Burri, L Smeds, H Ellegren Molecular ecology 25 (5), 1058-1072, 2016 | 160 | 2016 |
| Direct estimate of the rate of germline mutation in a bird L Smeds, A Qvarnström, H Ellegren Genome research 26 (9), 1211-1218, 2016 | 158 | 2016 |
| Demographic divergence history of pied flycatcher and collared flycatcher inferred from whole-genome re-sequencing data K Nadachowska-Brzyska, R Burri, PI Olason, T Kawakami, L Smeds, ... PLoS genetics 9 (11), e1003942, 2013 | 136 | 2013 |
| Evolutionary analysis of the female-specific avian W chromosome L Smeds, V Warmuth, P Bolivar, S Uebbing, R Burri, A Suh, A Nater, ... Nature communications 6 (1), 1-10, 2015 | 106 | 2015 |
| Resolving evolutionary relationships in closely related species with whole-genome sequencing data A Nater, R Burri, T Kawakami, L Smeds, H Ellegren Systematic Biology 64 (6), 1000-1017, 2015 | 98 | 2015 |
| Whole‐genome patterns of linkage disequilibrium across flycatcher populations clarify the causes and consequences of fine‐scale recombination rate variation in birds T Kawakami, CF Mugal, A Suh, A Nater, R Burri, L Smeds, H Ellegren Molecular ecology 26 (16), 4158-4172, 2017 | 72 | 2017 |
| High-resolution mapping of crossover and non-crossover recombination events by whole-genome re-sequencing of an avian pedigree L Smeds, CF Mugal, A Qvarnström, H Ellegren PLoS genetics 12 (5), e1006044, 2016 | 68 | 2016 |
| Patterns of sequencing coverage bias revealed by ultra-deep sequencing of vertebrate mitochondria R Ekblom, L Smeds, H Ellegren BMC genomics 15 (1), 1-9, 2014 | 68 | 2014 |
| Genome-wide association mapping in a wild avian population identifies a link between genetic and phenotypic variation in a life-history trait A Husby, T Kawakami, L Rönnegård, L Smeds, H Ellegren, A Qvarnström Proceedings of the Royal Society B: Biological Sciences 282 (1806), 20150156, 2015 | 56 | 2015 |
| Genome sequencing and conservation genomics in the Scandinavian wolverine population R Ekblom, B Brechlin, J Persson, L Smeds, M Johansson, J Magnusson, ... Conservation Biology 32 (6), 1301-1312, 2018 | 44 | 2018 |
| Genomic identification and characterization of the pseudoautosomal region in highly differentiated avian sex chromosomes L Smeds, T Kawakami, R Burri, P Bolivar, A Husby, A Qvarnström, ... Nature communications 5 (1), 1-7, 2014 | 41 | 2014 |
| Abundant recent activity of retrovirus‐like retrotransposons within and among flycatcher species implies a rich source of structural variation in songbird genomes A Suh, L Smeds, H Ellegren Molecular ecology 27 (1), 99-111, 2018 | 40 | 2018 |
Hans EllegrenUppsala UniversityVerified email at ebc.uu.se
