| BioPerf: A benchmark suite to evaluate high-performance computer architecture on bioinformatics applications DA Bader, Y Li, T Li, V Sachdeva IEEE International. 2005 Proceedings of the IEEE Workload Characterization …, 2005 | 106 | 2005 |
| Exploring the viability of the Cell Broadband Engine for bioinformatics applications V Sachdeva, M Kistler, E Speight, THK Tzeng Parallel Computing 34 (11), 616-626, 2008 | 94 | 2008 |
| Enabling high-performance computing as a service M AbdelBaky, M Parashar, H Kim, KE Jordan, V Sachdeva, J Sexton, ... Computer 45 (10), 72-80, 2012 | 84 | 2012 |
| A cache-aware parallel implementation of the push-relabel network flow algorithm and experimental evaluation of the gap relabeling heuristic DA Bader, V Sachdeva Georgia Institute of Technology, 2006 | 71 | 2006 |
| OpenRBC: A fast simulator of red blood cells at protein resolution YH Tang, L Lu, H Li, C Evangelinos, L Grinberg, V Sachdeva, ... Biophysical journal 112 (10), 2030-2037, 2017 | 31 | 2017 |
| OpenCL for HPC with FPGAs: Case study in molecular electrostatics C Yang, J Sheng, R Patel, A Sanaullah, V Sachdeva, MC Herbordt 2017 IEEE High Performance Extreme Computing Conference (HPEC), 1-8, 2017 | 22 | 2017 |
| Mesh interface resolution and ghost exchange in a parallel mesh representation TJ Tautges, JA Kraftcheck, N Bertram, V Sachdeva, J Magerlein 2012 IEEE 26th International Parallel and Distributed Processing Symposium …, 2012 | 17 | 2012 |
| Fully integrated FPGA molecular dynamics simulations C Yang, T Geng, T Wang, R Patel, Q Xiong, A Sanaullah, C Wu, J Sheng, ... Proceedings of the International Conference for High Performance Computing …, 2019 | 15 | 2019 |
| Evaluating the jaccard-tanimoto index on multi-core architectures V Sachdeva, DM Freimuth, C Mueller International Conference on Computational Science, 944-953, 2009 | 12 | 2009 |
| Molecular dynamics range-limited force evaluation optimized for FPGAs C Yang, T Geng, T Wang, C Lin, J Sheng, V Sachdeva, W Sherman, ... 2019 IEEE 30th International Conference on Application-specific Systems …, 2019 | 11 | 2019 |
| K-mer clustering algorithm using a MapReduce framework: application to the parallelization of the Inchworm module of Trinity CS Kim, MD Winn, V Sachdeva, KE Jordan BMC bioinformatics 18 (1), 1-15, 2017 | 8 | 2017 |
| BioS-PLASH: A sample workload for bioinformatics and computational biology for optimizing next-generation performance computer systems D Bader, V Sachdeva, V Agarwal, G Goel, AN Singh University of New Mexico, Tech. Rep, 2005 | 8 | 2005 |
| BioSPLASH: A sample workload for bioinformatics and computational biology for optimizing next-generation high-performance computer systems DA Bader, V Sachdeva, V Agarwal, G Goel, AN Singh Proc. 13th Int’l Conf. on Intel. Sys. for Mol. Bio.(ISMB 2005), 2005 | 6 | 2005 |
| BioSPLASH: A sample workload for bioinformatics and computational biology for optimizing next-generation high-performance computer systems DA Bader, V Sachdeva, V Agarwal, G Goel, AN Singh Proc. 13th Int’l Conf. on Intel. Sys. for Mol. Bio.(ISMB 2005), 2005 | 6 | 2005 |
| Exploring HPC-based scientific software as a service using CometCloud M AbdelBaky, J Diaz-Montes, M Johnston, V Sachdeva, RL Anderson, ... 10th IEEE international conference on collaborative computing: networking …, 2014 | 5 | 2014 |
| Parallelization of the Trinity pipeline for de novo transcriptome assembly V Sachdeva, CS Kim, KE Jordan, MD Winn 2014 IEEE International Parallel & Distributed Processing Symposium …, 2014 | 5 | 2014 |
| Determination of performance characteristics of scientific applications on IBM Blue Gene/Q C Evangelinos, RE Walkup, V Sachdeva, KE Jordan, H Gahvari, ... IBM Journal of Research and Development 57 (1/2), 9: 1-9: 12, 2013 | 4 | 2013 |
| An open benchmark suite for evaluating computer architecture on bioinformatics and life science applications DA Bader, V Sachdeva Georgia Institute of Technology, 2006 | 4 | 2006 |
| All-to-all comparisons on architectures having limited storage space DM Freimuth, V Sachdeva US Patent 8,595,466, 2013 | 3 | 2013 |
| Coupling a basin modeling and a seismic code using MOAB M Yan, K Jordan, D Kaushik, M Perrone, V Sachdeva, TJ Tautges, ... Procedia Computer Science 9, 986-993, 2012 | 3 | 2012 |
