Marnix Medema

Cited by

	All	Since 2020
Citations	33620	24722
h-index	69	62
i10-index	130	127

6000

3000

1500

4500

201120122013201420152016201720182019202020212022202320242025117 245 387 579 758 1172 1382 1658 2284 3054 4467 4561 5170 5734 1709

Public access

View all

137 articles

2 articles

available

not available

Based on funding mandates

Co-authors

Kai BlinSenior Researcher at the Novo Nordisk Foundation Center for BiosustainabilityVerified email at biosustain.dtu.dk
Tilmann WeberProfessor / Associate Scientific Director @ DTU Biosustain, Technical University of DenmarkVerified email at biosustain.dtu.dk
Eriko TakanoProfessor of Synthetic Biology, Manchester Institute of Biotechnology, University of ManchesterVerified email at manchester.ac.uk
Rainer BreitlingProfessor of Systems Biology, Manchester Institute of Biotechnology, University of ManchesterVerified email at manchester.ac.uk
Gilles van WezelLeiden University; NIOO-KNAWVerified email at biology.leidenuniv.nl
Satria A KautsarJoint Genome Institute / Berkeley LabVerified email at lbl.gov
Michael A FischbachStanford UniversityVerified email at fischbachgroup.org
Justin J.J. van der HooftAssistant Professor Computational Metabolomics @ WURVerified email at wur.nl
Jos M RaaijmakersKNAW, Leiden UniversityVerified email at nioo.knaw.nl
Nadine ZiemertAssociate Professor at University of Tuebingen, GermanyVerified email at uni-tuebingen.de
Peter CimermančičScientist, VerilyVerified email at ucsf.edu
Hernando SuarezWageningen UniversityVerified email at wur.nl
Sang Yup LeeKAISTVerified email at kaist.ac.kr
Mohammad Alanjarywageningen university and researchVerified email at wur.nl
Pieter C DorresteinUCSDVerified email at ucsd.edu
Vittorio TracannaPostdoc, Cologne UniversityVerified email at uni-koeln.de
Hyun Uk KimKAISTVerified email at kaist.ac.kr
Daniel KrugHelmholtz Institute for Pharmaceutical Research SaarlandVerified email at helmholtz-hzi.de
Victor J CarrionRamón y Cajal researcher/Assistant ProfessorVerified email at biology.leidenuniv.nl
Jorge C. Navarro-MuñozWageningen UniversityVerified email at wur.nl

Marnix Medema

Professor of Bioinformatics at Wageningen University & Leiden University

Verified email at wur.nl - Homepage

Computational Biology Bioinformatics Natural Products Microbiomes Synthetic Biology


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline K Blin, S Shaw, K Steinke, R Villebro, N Ziemert, SY Lee, MH Medema, ... Nucleic acids research 47 (W1), W81-W87, 2019	2904	2019
antiSMASH 6.0: improving cluster detection and comparison capabilities K Blin, S Shaw, AM Kloosterman, Z Charlop-Powers, GP Van Wezel, ... Nucleic acids research 49 (W1), W29-W35, 2021	2237	2021
antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences MH Medema, K Blin, P Cimermancic, V de Jager, P Zakrzewski, ... Nucleic Acids Research 39 (suppl 2), W339, 2011	2229	2011
antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters T Weber, K Blin, S Duddela, D Krug, HU Kim, R Bruccoleri, SY Lee, ... Nucleic acids research 43 (W1), W237-W243, 2015	2095	2015
Structure and function of the global topsoil microbiome M Bahram, F Hildebrand, SK Forslund, JL Anderson, NA Soudzilovskaia, ... Nature 560 (7717), 233-237, 2018	1981	2018
antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification K Blin, T Wolf, MG Chevrette, X Lu, CJ Schwalen, SA Kautsar, ... Nucleic acids research 45 (W1), W36-W41, 2017	1298	2017
antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation K Blin, S Shaw, HE Augustijn, ZL Reitz, F Biermann, M Alanjary, A Fetter, ... Nucleic acids research 51 (W1), W46-W50, 2023	1152	2023
Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters P Cimermancic, MH Medema, J Claesen, K Kurita, LCW Brown, ... Cell 158 (2), 412-421, 2014	1053	2014
antiSMASH 2.0—a versatile platform for genome mining of secondary metabolite producers K Blin, MH Medema, D Kazempour, MA Fischbach, R Breitling, E Takano, ... Nucleic acids research 41 (W1), W204-W212, 2013	989	2013
Minimum information about a biosynthetic gene cluster MH Medema, R Kottmann, P Yilmaz, M Cummings, JB Biggins, K Blin, ... Nature chemical biology 11 (9), 625-631, 2015	944	2015
Towards the sustainable discovery and development of new antibiotics M Miethke, M Pieroni, T Weber, M Brönstrup, P Hammann, L Halby, ... Nature Reviews Chemistry 5 (10), 726-749, 2021	914	2021
Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome VJ Carrión, J Perez-Jaramillo, V Cordovez, V Tracanna, M De Hollander, ... Science 366 (6465), 606-612, 2019	872	2019
A computational framework to explore large-scale biosynthetic diversity JC Navarro-Muñoz, N Selem-Mojica, MW Mullowney, SA Kautsar, ... Nature chemical biology 16 (1), 60-68, 2020	792	2020
NRPSpredictor2—a web server for predicting NRPS adenylation domain specificity M Röttig, MH Medema, K Blin, T Weber, C Rausch, O Kohlbacher Nucleic Acids Research 39 (suppl 2), W362, 2011	748	2011
MIBiG 2.0: a repository for biosynthetic gene clusters of known function SA Kautsar, K Blin, S Shaw, JC Navarro-Muñoz, BR Terlouw, ... Nucleic acids research 48 (D1), D454-D458, 2020	656	2020
Denitrifying bacteria anaerobically oxidize methane in the absence of Archaea KF Ettwig, S Shima, KT Van De Pas‐Schoonen, J Kahnt, MH Medema, ... Environmental microbiology 10 (11), 3164-3173, 2008	538	2008
Computational approaches to natural product discovery MH Medema, MA Fischbach Nature chemical biology 11 (9), 639-648, 2015	530	2015
Detecting sequence homology at the gene cluster level with MultiGeneBlast MH Medema, E Takano, R Breitling Molecular biology and evolution 30 (5), 1218-1223, 2013	396	2013
Ecology and genomics of Actinobacteria: new concepts for natural product discovery DA van Bergeijk, BR Terlouw, MH Medema, GP van Wezel Nature Reviews Microbiology 18 (10), 546-558, 2020	388	2020
The natural products atlas: an open access knowledge base for microbial natural products discovery JA Van Santen, G Jacob, AL Singh, V Aniebok, MJ Balunas, D Bunsko, ... ACS central science 5 (11), 1824-1833, 2019	377	2019

The system can't perform the operation now. Try again later.

Articles 1–20

Citations per year

Duplicate citations

Merged citations

Add co-authorsCo-authors

Follow

Cited by

Co-authors