Marnix Medema
Marnix Medema
Assistant Professor at Wageningen University
Dirección de correo verificada de wur.nl - Página principal
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antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters
T Weber, K Blin, S Duddela, D Krug, HU Kim, R Bruccoleri, SY Lee, ...
Nucleic acids research 43 (W1), W237-W243, 2015
15472015
antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences
MH Medema, K Blin, P Cimermancic, V de Jager, P Zakrzewski, ...
Nucleic Acids Research 39 (suppl 2), W339, 2011
11582011
antiSMASH 2.0—a versatile platform for genome mining of secondary metabolite producers
K Blin, MH Medema, D Kazempour, MA Fischbach, R Breitling, E Takano, ...
Nucleic acids research 41 (W1), W204-W212, 2013
7802013
antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification
K Blin, T Wolf, MG Chevrette, X Lu, CJ Schwalen, SA Kautsar, ...
Nucleic acids research 45 (W1), W36-W41, 2017
7532017
antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline
K Blin, S Shaw, K Steinke, R Villebro, N Ziemert, SY Lee, MH Medema, ...
Nucleic acids research 47 (W1), W81-W87, 2019
6022019
Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters
P Cimermancic, MH Medema, J Claesen, K Kurita, LCW Brown, ...
Cell 158 (2), 412-421, 2014
5282014
NRPSpredictor2—a web server for predicting NRPS adenylation domain specificity
M Röttig, MH Medema, K Blin, T Weber, C Rausch, O Kohlbacher
Nucleic Acids Research 39 (suppl 2), W362, 2011
5022011
Minimum information about a biosynthetic gene cluster
MH Medema, R Kottmann, P Yilmaz, M Cummings, JB Biggins, K Blin, ...
Nature chemical biology 11 (9), 625-631, 2015
4512015
Denitrifying bacteria anaerobically oxidize methane in the absence of Archaea
KF Ettwig, S Shima, KT Van De Pas‐Schoonen, J Kahnt, MH Medema, ...
Environmental microbiology 10 (11), 3164-3173, 2008
3972008
Structure and function of the global topsoil microbiome
M Bahram, F Hildebrand, SK Forslund, JL Anderson, NA Soudzilovskaia, ...
Nature 560 (7717), 233-237, 2018
3482018
Computational approaches to natural product discovery
MH Medema, MA Fischbach
Nature chemical biology 11 (9), 639, 2015
2642015
Computational tools for the synthetic design of biochemical pathways
MH Medema, R Van Raaphorst, E Takano, R Breitling
Nature Reviews Microbiology 10 (3), 191-202, 2012
2122012
MS/MS networking guided analysis of molecule and gene cluster families
DD Nguyen, CH Wu, WJ Moree, A Lamsa, MH Medema, X Zhao, ...
Proceedings of the National Academy of Sciences 110 (28), E2611-E2620, 2013
2072013
Detecting sequence homology at the gene cluster level with MultiGeneBlast
MH Medema, E Takano, R Breitling
Molecular Biology and Evolution 30 (5), 1218-1223, 2013
2042013
The sequence of a 1.8-Mb bacterial linear plasmid reveals a rich evolutionary reservoir of secondary metabolic pathways
MH Medema, A Trefzer, A Kovalchuk, M van den Berg, U Müller, W Heijne, ...
Genome biology and evolution 2, 212, 2010
1852010
Exploiting plug-and-play synthetic biology for drug discovery and production in microorganisms
MH Medema, R Breitling, R Bovenberg, E Takano
Nature Reviews Microbiology 9 (2), 131-137, 2011
1802011
The antiSMASH database, a comprehensive database of microbial secondary metabolite biosynthetic gene clusters
K Blin, MH Medema, R Kottmann, SY Lee, T Weber
Nucleic acids research, gkw960, 2016
1632016
Mechanisms and evolution of control logic in prokaryotic transcriptional regulation
SAFT van Hijum, MH Medema, OP Kuipers
Microbiology and Molecular Biology Reviews 73 (3), 481-509, 2009
1362009
A systematic computational analysis of biosynthetic gene cluster evolution: lessons for engineering biosynthesis
MH Medema, P Cimermancic, A Sali, E Takano, MA Fischbach
PLoS Comput Biol 10 (12), e1004016, 2014
1152014
A computational framework to explore large-scale biosynthetic diversity
JC Navarro-Muñoz, N Selem-Mojica, MW Mullowney, SA Kautsar, ...
Nature chemical biology 16 (1), 60-68, 2020
97*2020
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