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Gabriela K. Fragiadakis
Gabriela K. Fragiadakis
Assistant Professor and Director of the Data Science CoLab, University of California, San Francisco
Verified email at ucsf.edu
Title
Cited by
Cited by
Year
Gut-microbiota-targeted diets modulate human immune status
HC Wastyk, GK Fragiadakis, D Perelman, D Dahan, BD Merrill, ...
Cell 184 (16), 4137-4153. e14, 2021
6032021
Expression of specific inflammasome gene modules stratifies older individuals into two extreme clinical and immunological states
D Furman, J Chang, L Lartigue, CR Bolen, F Haddad, B Gaudilliere, ...
Nature medicine 23 (2), 174-184, 2017
3602017
Clinical recovery from surgery correlates with single-cell immune signatures
B Gaudillière, GK Fragiadakis, RV Bruggner, M Nicolau, R Finck, M Tingle, ...
Science translational medicine 6 (255), 255ra131-255ra131, 2014
3122014
An interactive reference framework for modeling a dynamic immune system
MH Spitzer, PF Gherardini, GK Fragiadakis, N Bhattacharya, RT Yuan, ...
Science 349 (6244), 1259425, 2015
2572015
Global absence and targeting of protective immune states in severe COVID-19
AJ Combes, T Courau, NF Kuhn, KH Hu, A Ray, WS Chen, NW Chew, ...
Nature 591 (7848), 124-130, 2021
2272021
Type I interferon autoantibodies are associated with systemic immune alterations in patients with COVID-19
MGP van der Wijst, SE Vazquez, GC Hartoularos, P Bastard, T Grant, ...
Science translational medicine 13 (612), eabh2624, 2021
1642021
Gut microbiome transition across a lifestyle gradient in Himalaya
AR Jha, ER Davenport, Y Gautam, D Bhandari, S Tandukar, KM Ng, ...
PLoS biology 16 (11), e2005396, 2018
1622018
Links between environment, diet, and the hunter-gatherer microbiome
GK Fragiadakis, SA Smits, ED Sonnenburg, W Van Treuren, G Reid, ...
Gut Microbes 10 (2), 216-227, 2019
1332019
Transient partial permeabilization with saponin enables cellular barcoding prior to surface marker staining
GK Behbehani, C Thom, ER Zunder, R Finck, B Gaudilliere, ...
Cytometry Part A 85 (12), 1011-1019, 2014
1212014
Pursuing human-relevant gut microbiota-immune interactions
SP Spencer, GK Fragiadakis, JL Sonnenburg
Immunity 51 (2), 225-239, 2019
1132019
Long-term dietary intervention reveals resilience of the gut microbiota despite changes in diet and weight
GK Fragiadakis, HC Wastyk, JL Robinson, ED Sonnenburg, ...
The American journal of clinical nutrition 111 (6), 1127-1136, 2020
992020
dittoSeq: universal user-friendly single-cell and bulk RNA sequencing visualization toolkit
DG Bunis, J Andrews, GK Fragiadakis, TD Burt, M Sirota
Bioinformatics 36 (22-23), 5535-5536, 2020
962020
A comprehensive atlas of immunological differences between humans, mice, and non-human primates
ZB Bjornson-Hooper, GK Fragiadakis, MH Spitzer, H Chen, DR McIlwain
Frontiers in immunology 13, 867015, 2022
902022
Patient-specific immune states before surgery are strong correlates of surgical recovery
GK Fragiadakis, B Gaudillière, EA Ganio, N Aghaeepour, M Tingle, ...
Anesthesiology 123 (6), 1241-1255, 2015
892015
Multicenter systems analysis of human blood reveals immature neutrophils in males and during pregnancy
J Blazkova, S Gupta, Y Liu, B Gaudilliere, EA Ganio, CR Bolen, ...
The Journal of Immunology 198 (6), 2479-2488, 2017
802017
Sex differences in the blood transcriptome identify robust changes in immune cell proportions with aging and influenza infection
E Bongen, H Lucian, A Khatri, GK Fragiadakis, ZB Bjornson, GP Nolan, ...
Cell Reports 29 (7), 1961-1973. e4, 2019
792019
Discovering dominant tumor immune archetypes in a pan-cancer census
AJ Combes, B Samad, J Tsui, NW Chew, P Yan, GC Reeder, D Kushnoor, ...
Cell 185 (1), 184-203. e19, 2022
712022
Increased risk of severe clinical course of COVID-19 in carriers of HLA-C* 04: 01
J Weiner, P Suwalski, M Holtgrewe, A Rakitko, C Thibeault, M Mueller, ...
EClinicalMedicine 40, 2021
692021
Implementing mass cytometry at the bedside to study the immunological basis of human diseases: distinctive immune features in patients with a history of term or preterm birth
B Gaudillière, EA Ganio, M Tingle, HL Lancero, GK Fragiadakis, QJ Baca, ...
Cytometry Part A 87 (9), 817-829, 2015
542015
The effect of microbial colonization on the host proteome varies by gastrointestinal location
JS Lichtman, E Alsentzer, M Jaffe, D Sprockett, E Masutani, E Ikwa, ...
The ISME journal 10 (5), 1170-1181, 2016
422016
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