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Lenore Pipes
Lenore Pipes
Unknown affiliation
Verified email at berkeley.edu
Title
Cited by
Cited by
Year
Anacapa Toolkit: An environmental DNA toolkit for processing multilocus metabarcode datasets
EE Curd, Z Gold, GS Kandlikar, J Gomer, M Ogden, T O'Connell, L Pipes, ...
Methods in Ecology and Evolution 10 (9), 1469-1475, 2019
1022019
Genomic responses to selection for tame/aggressive behaviors in the silver fox (Vulpes vulpes)
X Wang, L Pipes, LN Trut, Y Herbeck, AV Vladimirova, RG Gulevich, ...
Proceedings of the National Academy of Sciences 115 (41), 10398-10403, 2018
822018
Synonymous mutations and the molecular evolution of SARS-Cov-2 origins
H Wang, L Pipes, R Nielsen
Virus evolution 7 (1), veaa098, 2021
792021
The non-human primate reference transcriptome resource (NHPRTR) for comparative functional genomics
L Pipes, S Li, M Bozinoski, R Palermo, X Peng, P Blood, S Kelly, ...
Nucleic acids research 41 (D1), D906-D914, 2013
752013
Sooty mangabey genome sequence provides insight into AIDS resistance in a natural SIV host
D Palesch, SE Bosinger, GK Tharp, TH Vanderford, M Paiardini, ...
Nature 553 (7686), 77-81, 2018
712018
AutoDecon, a deconvolution algorithm for identification and characterization of luteinizing hormone secretory bursts: Description and validation using synthetic data
ML Johnson, L Pipes, PP Veldhuis, LS Farhy, DG Boyd, WS Evans
Analytical biochemistry 381 (1), 8-17, 2008
702008
Tissue-specific transcriptome sequencing analysis expands the non-human primate reference transcriptome resource (NHPRTR)
X Peng, J Thierry-Mieg, D Thierry-Mieg, A Nishida, L Pipes, M Bozinoski, ...
Nucleic acids research 43 (D1), D737-D742, 2015
692015
AutoDecon: a robust numerical method for the quantification of pulsatile events
ML Johnson, L Pipes, PP Veldhuis, LS Farhy, R Nass, MO Thorner, ...
Methods in enzymology 454, 367-404, 2009
642009
Assessing uncertainty in the rooting of the SARS-CoV-2 phylogeny
L Pipes, H Wang, JP Huelsenbeck, R Nielsen
Molecular biology and evolution 38 (4), 1537-1543, 2021
532021
The CALeDNA program: Citizen scientists and researchers inventory California’s biodiversity
RS Meyer, MM Ramos, M Lin, TM Schweizer, Z Gold, DR Ramos, ...
California Agriculture 75 (1), 2021
232021
Enabling large-scale next-generation sequence assembly with Blacklight
MB Couger, L Pipes, PD Blood, CE Mason
Proceedings of the Conference on Extreme Science and Engineering Discovery …, 2013
132013
The California environmental DNA “CALeDNA” program
RS Meyer, EE Curd, T Schweizer, Z Gold, DR Ramos, S Shirazi, ...
BioRxiv, 503383, 2019
112019
Anacapa Toolkit: an environmental DNA toolkit for processing multilocus metabarcode datasets. Methods Ecol Evol 10: 1469–1475
EE Curd, Z Gold, GS Kandlikar, J Gomer, M Ogden, T O’connell, L Pipes, ...
72019
The California environmental DNA “CALeDNA” Program, bioRxiv, 503383
RS Meyer, EE Curd, T Schweizer, Z Gold, DR Ramos, S Shirazi, ...
72019
The prehistory of Mongolian populations as revealed by studies of osteological, dental, and genetic variation
T Schurr, L Pipes
na, 2011
72011
AncestralClust: clustering of divergent nucleotide sequences by ancestral sequence reconstruction using phylogenetic trees
L Pipes, R Nielsen
Bioinformatics 38 (3), 663-670, 2022
62022
Estimating the relative proportions of SARS-CoV-2 strains from wastewater samples
L Pipes, Z Chen, S Afanaseva, R Nielsen
medRxiv, 2022.01. 13.22269236, 2022
62022
Assessment and improvement of Indian‐origin rhesus macaque and M auritian‐origin cynomolgus macaque genome annotations using deep transcriptome sequencing data
X Peng, L Pipes, H Xiong, RR Green, DC Jones, WL Ruzzo, GP Schroth, ...
Journal of medical primatology 43 (5), 317-328, 2014
52014
High‐throughput RNA sequencing reveals structural differences of orthologous brain‐expressed genes between western lowland gorillas and humans
L Lipovich, ZC Hou, H Jia, C Sinkler, M McGowen, KN Sterner, A Weckle, ...
Journal of Comparative Neurology 524 (2), 288-308, 2016
42016
Estimating the relative proportions of SARS-CoV-2 haplotypes from wastewater samples
L Pipes, Z Chen, S Afanaseva, R Nielsen
Cell reports methods 2 (10), 2022
32022
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