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Yang Lu
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Citado por
Año
VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data
J Ren, NA Ahlgren, YY Lu, JA Fuhrman, F Sun
Microbiome 5 (1), 1-20, 2017
4802017
Alignment-free oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences
NA Ahlgren, J Ren, YY Lu, JA Fuhrman, F Sun
Nucleic Acids Research 45 (1), 39-53, 2017
2582017
COCACOLA: binning metagenomic contigs using sequence COmposition, read CoverAge, CO-alignment and paired-end read LinkAge
YY Lu, T Chen, JA Fuhrman, F Sun
Bioinformatics 33 (6), 791-798, 2017
1572017
DeepPINK: Reproducible feature selection in deep neural networks
YY Lu, Y Fan, J Lv, WS Noble
Neural Information Processing Systems (NeurIPS), 8676-8686, 2018
1502018
Alignment-free sequence analysis and applications
J Ren, X Bai, YY Lu, K Tang, Y Wang, G Reinert, F Sun
Annual Review of Biomedical Data Science 1, 93-114, 2018
832018
CAFE: aCcelerated Alignment-FrEe sequence analysis
YY Lu, K Tang, J Ren, JA Fuhrman, MS Waterman, F Sun
Nucleic Acids Research 45 (W1), W554-W559, 2017
672017
SolidBin: improving metagenome binning with semi-supervised normalized cut
Z Wang, Z Wang, YY Lu, F Sun, S Zhu
Bioinformatics 35 (21), 4229-4238, 2019
562019
Predicting gene expression in the human malaria parasite Plasmodium falciparum using histone modification, nucleosome positioning, and 3D localization features
DF Read, K Cook, YY Lu, KGL Roch, WS Noble
PLoS Computational Biology 15 (9), e1007329, 2019
432019
Improving contig binning of metagenomic data using oligonucleotide frequency dissimilarity
Y Wang, K Wang, YY Lu, F Sun
BMC Bioinformatics 18 (1), 1-14, 2017
182017
Ledidi: Designing genomic edits that induce functional activity
J Schreiber, YY Lu, WS Noble
ICML Workshop on Computational Biology, 2020
132020
DANCE: Enhancing saliency maps using decoys
YY Lu, W Guo, X Xing, WS Noble
International Conference on Machine Learning (ICML), 2021
122021
DIAmeter: Matching peptides to data-independent acquisition mass spectrometry data
YY Lu, J Bilmes, RA Rodriguez-Mias, J Villén, WS Noble
International Conference on Intelligent Systems for Molecular Biology (ISMB), 2021
122021
Background Adjusted Alignment-Free Dissimilarity Measures Improve the Detection of Horizontal Gene Transfer
K Tang, YY Lu, F Sun
Frontiers in microbiology 9, 711, 2018
112018
Reducing peptide sequence bias in quantitative mass spectrometry data with machine learning
AB Dincer, YY Lu, DK Schweppe, S Oh, WS Noble
Journal of Proteome Research 21 (7), 1771-1782, 2022
82022
Proteome-wide identification of amino acid substitutions deleterious for protein function
RA Rodriguez-Mias, KN Hess, BY Ruiz, IR Smith, AS Barente, ...
bioRxiv, 2022
62022
Retrieved Sequence Augmentation for Protein Representation Learning
C Ma, H Zhao, L Zheng, J Xin, Q Li, L Wu, Z Deng, YY Lu, Q Liu, L Kong
bioRxiv, 2023.02. 22.529597, 2023
52023
ACE: Explaining cluster from an adversarial perspective
YY Lu, T Yu, G Bonora, WS Noble
International Conference on Machine Learning (ICML), 2021
52021
Joint precursor elution profile inference via regression for peptide detection in data-independent acquisition mass spectra
A Hu, YY Lu, J Bilmes, WS Noble
Journal of Proteome Research 18 (1), 86-94, 2018
52018
The Crux toolkit for analysis of bottom-up tandem mass spectrometry proteomics data
A Kertesz-Farkas, FL Nii Adoquaye Acquaye, K Bhimani, JK Eng, ...
Journal of Proteome Research, 2023
42023
A wider field of view to predict expression
YY Lu, WS Noble
Nature Methods 18, 1155–1156, 2021
42021
El sistema no puede realizar la operación en estos momentos. Inténtalo de nuevo más tarde.
Artículos 1–20