Javier Carrera
Javier Carrera
Stanford University
Dirección de correo verificada de synth-bio.org - Página principal
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DESHARKY: automatic design of metabolic pathways for optimal cell growth
G Rodrigo, J Carrera, KJ Prather, A Jaramillo
Bioinformatics 24 (21), 2554-2556, 2008
1112008
Reverse-engineering the Arabidopsis thaliana transcriptional network under changing environmental conditions
J Carrera, G Rodrigo, A Jaramillo, SF Elena
Genome biology 10 (9), 1-15, 2009
882009
Genetdes: automatic design of transcriptional networks
G Rodrigo, J Carrera, A Jaramillo
Bioinformatics 23 (14), 1857-1858, 2007
822007
An integrative, multi‐scale, genome‐wide model reveals the phenotypic landscape of Escherichia coli
J Carrera, R Estrela, J Luo, N Rai, A Tsoukalas, I Tagkopoulos
Molecular systems biology 10 (7), 735, 2014
752014
A meta-analysis reveals the commonalities and differences in Arabidopsis thaliana response to different viral pathogens
G Rodrigo, J Carrera, V Ruiz-Ferrer, FJ del Toro, C Llave, O Voinnet, ...
PLoS One 7 (7), e40526, 2012
752012
Changes in the gene expression profile of Arabidopsis thaliana after infection with Tobacco etch virus
P Agudelo-Romero, P Carbonell, F De La Iglesia, J Carrera, G Rodrigo, ...
Virology journal 5 (1), 1-11, 2008
672008
Empirical model and in vivo characterization of the bacterial response to synthetic gene expression show that ribosome allocation limits growth rate
J Carrera, G Rodrigo, V Singh, B Kirov, A Jaramillo
Biotechnology journal 6 (7), 773-783, 2011
592011
Computational design of synthetic regulatory networks from a genetic library to characterize the designability of dynamical behaviors
G Rodrigo, J Carrera, A Jaramillo
Nucleic acids research 39 (20), e138-e138, 2011
472011
Why build whole-cell models?
J Carrera, MW Covert
Trends in cell biology 25 (12), 719-722, 2015
462015
Asmparts: assembly of biological model parts
G Rodrigo, J Carrera, A Jaramillo
Systems and synthetic biology 1 (4), 167-170, 2007
452007
A systems biology approach to the evolution of plant–virus interactions
SF Elena, J Carrera, G Rodrigo
Current opinion in plant biology 14 (4), 372-377, 2011
412011
Model-based redesign of global transcription regulation
J Carrera, G Rodrigo, A Jaramillo
Nucleic acids research 37 (5), e38-e38, 2009
392009
Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation
DN Macklin, TA Ahn-Horst, H Choi, NA Ruggero, J Carrera, JC Mason, ...
Science 369 (6502), 2020
332020
Optimal viral strategies for bypassing RNA silencing
G Rodrigo, J Carrera, A Jaramillo, SF Elena
Journal of The Royal Society Interface 8 (55), 257-268, 2011
312011
Towards the automated engineering of a synthetic genome
J Carrera, G Rodrigo, A Jaramillo
Molecular BioSystems 5 (7), 733-743, 2009
202009
Pareto optimization in computational protein design with multiple objectives
M Suárez, P Tortosa, J Carrera, A Jaramillo
Journal of computational chemistry 29 (16), 2704-2711, 2008
202008
Perspectives on the automatic design of regulatory systems for synthetic biology
G Rodrigo, J Carrera, TE Landrain, A Jaramillo
FEBS letters 586 (15), 2037-2042, 2012
182012
Modular model-based design for heterologous bioproduction in bacteria
TE Landrain, J Carrera, B Kirov, G Rodrigo, A Jaramillo
Current Opinion in Biotechnology 20 (3), 272-279, 2009
182009
Computational design of genomic transcriptional networks with adaptation to varying environments
J Carrera, SF Elena, A Jaramillo
Proceedings of the National Academy of Sciences 109 (38), 15277-15282, 2012
172012
Network design meets in silico evolutionary biology
G Rodrigo, J Carrera, SF Elena
Biochimie 92 (7), 746-752, 2010
132010
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Artículos 1–20