Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 17973 | 2019 |
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking MX Wang, JJ Carver, VV Phelan, LM Sanchez, N Garg, Y Peng, ... Nature Biotechnology 34, 828–837 (2016) doi:10.1038/nbt.3597 34, 828-837, 2016 | 3849 | 2016 |
Feature-based molecular networking in the GNPS analysis environment LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer, A Sarvepalli, ... Nature methods 17 (9), 905-908, 2020 | 1118 | 2020 |
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018 | 1045 | 2018 |
Reproducible molecular networking of untargeted mass spectrometry data using GNPS AT Aron, EC Gentry, KL McPhail, LF Nothias, M Nothias-Esposito, ... Nature protocols 15 (6), 1954-1991, 2020 | 554 | 2020 |
MolNetEnhancer: enhanced molecular networks by integrating metabolome mining and annotation tools M Ernst, KB Kang, AM Caraballo-Rodríguez, LF Nothias, J Wandy, ... Metabolites 9 (7), 144, 2019 | 355 | 2019 |
Propagating annotations of molecular networks using in silico fragmentation RR da Silva, M Wang, LF Nothias, JJJ van der Hooft, ... PLoS computational biology 14 (4), e1006089, 2018 | 344 | 2018 |
Chemical signaling involved in plant–microbe interactions FO Chagas, R de Cassia Pessotti, AM Caraballo-Rodríguez, MT Pupo Chemical Society Reviews 47 (5), 1652-1704, 2018 | 246 | 2018 |
Mass spectrometry searches using MASST M Wang, AK Jarmusch, F Vargas, AA Aksenov, JM Gauglitz, K Weldon, ... Nature biotechnology 38 (1), 23-26, 2020 | 226 | 2020 |
Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment R Schmid, D Petras, LF Nothias, M Wang, AT Aron, A Jagels, H Tsugawa, ... Nature communications 12 (1), 3832, 2021 | 216 | 2021 |
QIIME 2: reproducible, interactive, scalable, and extensible microbiome data science. PeerJ E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... Inc 6, e27295v2, 2018 | 208 | 2018 |
A convolutional neural network-based approach for the rapid annotation of molecularly diverse natural products R Reher, HW Kim, C Zhang, HH Mao, M Wang, LF Nothias, ... Journal of the American Chemical Society 142 (9), 4114-4120, 2020 | 177 | 2020 |
The extracellular matrix protects Bacillus subtilis colonies from Pseudomonas invasion and modulates plant co-colonization C Molina-Santiago, JR Pearson, Y Navarro, MV Berlanga-Clavero, ... Nature communications 10 (1), 1919, 2019 | 144 | 2019 |
ReDU: a framework to find and reanalyze public mass spectrometry data AK Jarmusch, M Wang, CM Aceves, RS Advani, S Aguirre, AA Aksenov, ... Nature Methods 17 (9), 901-904, 2020 | 101 | 2020 |
Natural products as mediators of disease N Garg, T Luzzatto-Knaan, AV Melnik, AM Caraballo-Rodríguez, ... Natural product reports 34 (2), 194-219, 2017 | 80 | 2017 |
Untargeted mass spectrometry-based metabolomics approach unveils molecular changes in raw and processed foods and beverages JM Gauglitz, CM Aceves, AA Aksenov, G Aleti, J Almaliti, A Bouslimani, ... Food chemistry 302, 125290, 2020 | 65 | 2020 |
Endophytic Actinobacteria from the Brazilian Medicinal Plant Lychnophora ericoides Mart. and the Biological Potential of Their Secondary Metabolites R Conti, FO Chagas, AM Caraballo‐Rodriguez, WGP Melo, ... Chemistry & Biodiversity 13 (6), 727-736, 2016 | 62 | 2016 |
Bacillus subtilis biofilm matrix components target seed oil bodies to promote growth and anti-fungal resistance in melon MV Berlanga-Clavero, C Molina-Santiago, AM Caraballo-Rodríguez, ... Nature microbiology 7 (7), 1001-1015, 2022 | 61 | 2022 |
Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery B Behsaz, E Bode, A Gurevich, YN Shi, F Grundmann, D Acharya, ... Nature communications 12 (1), 3225, 2021 | 55 | 2021 |
microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data S Zuffa, R Schmid, A Bauermeister, PW P. Gomes, ... Nature microbiology 9 (2), 336-345, 2024 | 50 | 2024 |