Benjamin Schubert
Benjamin Schubert
Team Leader, ICB@Helmholtz Center Munich
Dirección de correo verificada de helmholtz-muenchen.de - Página principal
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OptiType: precision HLA typing from next-generation sequencing data
A Szolek, B Schubert, C Mohr, M Sturm, M Feldhahn, O Kohlbacher
Bioinformatics 30 (23), 3310-3316, 2014
2302014
Evaluation of peptide selection approaches for epitope‐based vaccine design
B Schubert, O Lund, M Nielsen
Tissue antigens 82 (4), 243-251, 2013
242013
Designing string-of-beads vaccines with optimal spacers
B Schubert, O Kohlbacher
Genome medicine 8 (1), 9, 2016
232016
EpiToolKit—a web-based workbench for vaccine design
B Schubert, HP Brachvogel, C Jürges, O Kohlbacher
Bioinformatics 31 (13), 2211-2213, 2015
222015
FRED 2: an immunoinformatics framework for Python
B Schubert, M Walzer, HP Brachvogel, A Szolek, C Mohr, O Kohlbacher
Bioinformatics 32 (13), 2044-2046, 2016
202016
The EVcouplings Python framework for coevolutionary sequence analysis
TA Hopf, AG Green, B Schubert, S Mersmann, CPI Schärfe, JB Ingraham, ...
Bioinformatics 35 (9), 1582-1584, 2019
102019
Genome-wide discovery of epistatic loci affecting antibiotic resistance in Neisseria gonorrhoeae using evolutionary couplings
B Schubert, R Maddamsetti, J Nyman, MR Farhat, DS Marks
Nature microbiology 4 (2), 328-338, 2019
92019
miHA-match: computational detection of tissue-specific minor histocompatibility antigens
M Feldhahn, P Dönnes, B Schubert, K Schilbach, HG Rammensee, ...
Journal of immunological methods 386 (1-2), 94-100, 2012
92012
ImmunoNodes–graphical development of complex immunoinformatics workflows
B Schubert, L de la Garza, C Mohr, M Walzer, O Kohlbacher
BMC bioinformatics 18 (1), 1-7, 2017
72017
Induction of neoantigen-reactive T cells from healthy donors.
M Ali, Z Foldvari, E Giannakopoulou, ML Böschen, E Strønen, W Yang, ...
Nature protocols 14 (6), 1926-1943, 2019
62019
Population-specific design of de-immunized protein biotherapeutics
B Schubert, C Schärfe, P Dönnes, T Hopf, D Marks, O Kohlbacher
PLoS computational biology 14 (3), e1005983, 2018
62018
An unusually high substitution rate in transplant-associated BK polyomavirus in vivo is further concentrated in HLA-C-bound viral peptides
P Domingo-Calap, B Schubert, M Joly, M Solis, M Untrau, R Carapito, ...
PLoS pathogens 14 (10), e1007368, 2018
32018
Ws-pgrade/guse-based science gateways in teaching
SD Olabarriaga, A Benabdelkader, MWA Caan, MM Jaghoori, J Krüger, ...
Science Gateways for Distributed Computing Infrastructures, 223-234, 2014
32014
Genome-wide discovery of epistatic loci affecting antibiotic resistance using evolutionary couplings
B Schubert, R Maddamsetti, J Nyman, MR Farhat, DS Marks
bioRxiv, 325993, 2018
22018
ClinOmicsTrailbc: a visual analytics tool for breast cancer treatment stratification
L Schneider, T Kehl, K Thedinga, NL Grammes, C Backes, C Mohr, ...
Bioinformatics 35 (24), 5171-5181, 2019
12019
Predicting antigen-specificity of single T-cells based on TCR CDR3 regions
DS Fischer, Y Wu, B Schubert, FJ Theis
BioRxiv, 734053, 2019
12019
Graph-Theoretical Formulation of the Generalized Epitope-based Vaccine Design Problem
E Dorigatti, B Schubert
bioRxiv, 845503, 2019
2019
Advanced Immunoinformatics Approaches for Precision Medicine
B Schubert
Eberhard Karls Universität Tübingen, 2017
2017
Master Practical
FTCMM Heinig, B Schubert
Project links
T Hopf, B Schubert
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Artículos 1–20