Stefanie Widder
Stefanie Widder
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Cited by
Deciphering microbial interactions and detecting keystone species with co-occurrence networks
D Berry, S Widder
Frontiers in microbiology 5, 90985, 2014
Challenges in microbial ecology: building predictive understanding of community function and dynamics
S Widder, RJ Allen, T Pfeiffer, TP Curtis, C Wiuf, WT Sloan, OX Cordero, ...
The ISME journal 10 (11), 2557-2568, 2016
The origin and evolution of cell types
D Arendt, JM Musser, CVH Baker, A Bergman, C Cepko, DH Erwin, ...
Nature Reviews Genetics 17 (12), 744-757, 2016
Fluvial network organization imprints on microbial co-occurrence networks
S Widder, K Besemer, GA Singer, S Ceola, E Bertuzzo, C Quince, ...
Proceedings of the National Academy of Sciences 111 (35), 12799-12804, 2014
The SBML ODE Solver Library: a native API for symbolic and fast numerical analysis of reaction networks
R Machné, A Finney, S Müller, J Lu, S Widder, C Flamm
Bioinformatics 22 (11), 1406-1407, 2006
p59OASL, a 2′–5′ oligoadenylate synthetase like protein: a novel human gene related to the 2′–5′ oligoadenylate synthetase family
R Hartmann, HS Olsen, S Widder, R Jørgensen, J Justesen
Nucleic acids research 26 (18), 4121-4127, 1998
A generalized model of the repressilator
S Müller, J Hofbauer, L Endler, C Flamm, S Widder, P Schuster
Journal of mathematical biology 53, 905-937, 2006
Signatures of ecological processes in microbial community time series
K Faust, F Bauchinger, B Laroche, S De Buyl, L Lahti, AD Washburne, ...
Microbiome 6, 1-13, 2018
Ecological networking of cystic fibrosis lung infections
RA Quinn, K Whiteson, YW Lim, J Zhao, D Conrad, JJ LiPuma, F Rohwer, ...
NPJ biofilms and microbiomes 2 (1), 4, 2016
Dynamic patterns of gene regulation I: simple two-gene systems
S Widder, J Schicho, P Schuster
Journal of theoretical biology 246 (3), 395-419, 2007
Using metabolic networks to resolve ecological properties of microbiomes
EEL Muller, K Faust, S Widder, M Herold, SM Arbas, P Wilmes
Current Opinion in Systems Biology 8, 73-80, 2018
Why are cellular switches Boolean? General conditions for multistable genetic circuits
J Macía, S Widder, R Solé
Journal of theoretical biology 261 (1), 126-135, 2009
Isaac Newton Institute Fellows, Soyer OS. 2016. Challenges in microbial ecology: building predictive understanding of community function and dynamics
S Widder, RJ Allen, T Pfeiffer, TP Curtis, C Wiuf, WT Sloan, OX Cordero, ...
ISME J 10 (11), 2557-2568, 0
Biogeographic variation in the microbiome of the ecologically important sponge, Carteriospongia foliascens
HM Luter, S Widder, ES Botté, MA Wahab, S Whalan, L Moitinho-Silva, ...
PeerJ 3, e1435, 2015
Ultra deep sequencing of Listeria monocytogenes sRNA transcriptome revealed new antisense RNAs
S Behrens, S Widder, GK Mannala, X Qing, R Madhugiri, N Kefer, ...
PLoS One 9 (2), e83979, 2014
Specialized or flexible feed-forward loop motifs: a question of topology
J Macía, S Widder, R Solé
BMC systems biology 3, 1-18, 2009
Metagenomic Analysis Reveals Presence of Treponema denticola in a Tissue Biopsy of the Iceman
F Maixner, A Thomma, G Cipollini, S Widder, T Rattei, A Zink
PloS one 9 (6), e99994, 2014
Monomeric bistability and the role of autoloops in gene regulation
S Widder, J Macía, R Solé
PLoS One 4 (4), e5399, 2009
Evolvability of feed-forward loop architecture biases its abundance in transcription networks
S Widder, R Solé, J Macía
BMC systems biology 6, 1-9, 2012
Multi-omics profiling predicts allograft function after lung transplantation
ML Watzenboeck, AD Gorki, F Quattrone, R Gawish, S Schwarz, ...
European Respiratory Journal 59 (2), 2022
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