| Predicting the immune response to repurposed drugs in coronavirus-induced cytokine storm MC Morris, CA Lyman, S Richman, HB Cao, C Cheadle, G Broderick 2020 IEEE 20th International Conference on Bioinformatics and Bioengineering …, 2020 | 5 | 2020 |
| Whole Genome Phylogenetic Tree Reconstruction Using Colored de Bruijn Graphs CA Lyman, MS Fujimoto, A Suvorov, PM Bodily, Q Snell, KA Crandall, ... arXiv preprint arXiv:1709.00164, 2017 | 5 | 2017 |
| The PepSeq Pipeline: Software for antimicrobial motif discovery in randomly-generated peptide libraries TD Jensen, KA Bresciano, E Dallon, MS Fujimoto, CA Lyman, E Stewart, ... Proceedings of the 2018 ACM International Conference on Bioinformatics …, 2018 | 4 | 2018 |
| Modeling global and local codon bias with deep language models MS Fujimoto, PM Bodily, CA Lyman, AJ Jacobsen, Q Snell, MJ Clement 2017 IEEE 17th International Conference on Bioinformatics and Bioengineering …, 2017 | 4 | 2017 |
| Genome polymorphism detection through relaxed de bruijn graph construction MS Fujimoto, C Lyman, A Suvorov, P Bodily, Q Snell, K Crandall, S Bybee, ... 2017 IEEE 17th International Conference on Bioinformatics and Bioengineering …, 2017 | 4 | 2017 |
| Hacking the Immune Response to Infection in Chronic Obstructive Pulmonary Disease MC Morris, S Richman, CA Lyman, J Qu, MJ Mammen, S Sethi, ... 2020 IEEE 20th International Conference on Bioinformatics and Bioengineering …, 2020 | 3 | 2020 |
| Old drugs, new tricks: leveraging known compounds to disrupt coronavirus-induced cytokine storm S Richman, C Lyman, A Nesterova, A Yuryev, M Morris, H Cao, ... NPJ Systems Biology and Applications 8 (1), 38, 2022 | 2 | 2022 |
| Attractor landscapes as a model selection criterion in data poor environments CA Lyman, S Richman, MC Morris, H Cao, A Scerri, C Cheadle, ... bioRxiv, 2021.11. 09.466986, 2021 | 2 | 2021 |
| Kcollections: A fast and efficient library for k-mers MS Fujimoto, CA Lyman, MJ Clement 2020 IEEE International Parallel and Distributed Processing Symposium …, 2020 | 2 | 2020 |
| Feedback regulation of immune response to maximum exercise in gulf war Illness CA Lyman, M Clement, TJA Craddock, M Fletcher, NG Klimas, ... Proceedings of the 10th ACM International conference on bioinformatics …, 2019 | 2 | 2019 |
| The polygraph: A data structure for genome alignment and variation detection MS Fujimoto, C Lyman, M Clement | 2 | 2019 |
| Learning the Language of Genes: Representing Global Codon Bias with Deep Language Models MS Fujimoto, PM Bodily, CA Lyman, JA Jacobsen, MJ Clement | 2 | 2017 |
| Network modeling of complex time-dependent changes in patient adherence to adjuvant endocrine treatment in ER+ breast cancer EH Shinn, BE Busch, N Jasemi, CA Lyman, JT Toole, SC Richman, ... Frontiers in Psychology 13, 856813, 2022 | 1 | 2022 |
| Computational prediction of intracellular targets of wild-type or mutant vesicular stomatitis matrix protein MC Morris, TM Russell, CA Lyman, WK Wong, G Broderick, MC Ferran Plos one 17 (2), e0263065, 2022 | 1 | 2022 |
| High fidelity modeling of pulse dynamics using logic networks CA Lyman, MM Morris, S Richman, H Cao, A Scerri, C Cheadle, ... 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2021 | 1 | 2021 |
| When the how outweighs the what: the pivotal importance of context CA Lyman, C Anderson, M Morris, UK Nandal, MJ Martindale, M Clement, ... 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2019 | 1 | 2019 |
| GNUMAP 4.0: Space and Time Efficient NGS Read Mapping Using the FM-Index MS Fujimoto, CA Lyman, PM Bodily, MJ Clement, Q Snell Insights of Bioinformatics 1 (1), 1-8, 2018 | 1 | 2018 |
| Inflammation as a Silent Partner in Opioid Addiction: A Regulatory Logic Model JT Toole, M Morris, CA Lyman, G Spink Jr, G Broderick bioRxiv, 2022.04. 26.489572, 2022 | | 2022 |
| MODELING BREAST CANCER PATIENT ADHERENCE TRAJECTORIES BY COMBINING DECISIONAL NETWORK MODELS AND QUALITATIVE ANALYSIS E Shinn, G Broderick, C Lyman, F Symmans, T Toole ANNALS OF BEHAVIORAL MEDICINE 56 (SUPP 1), S399-S399, 2022 | | 2022 |
| Leveraging Drug-Target Interaction Data for the Translation of Computational Models into Clinically Actionable Interventions SC Richmanz, CA Lyman, MC Morris, H Caoy, A Nesterovay, A Yuryevy, ... 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2021 | | 2021 |
Mark ClementProfessor of Computer Science, Brigham Young UniversityVerified email at cs.byu.edu
