| BANNER: An executable survey of advances in biomedical named entity recognition R Leaman, G Gonzalez Pacific Symposium on Biocomputing 13, 652-663, 2008 | 610 | 2008 |
| Pharmacovigilance from social media: mining adverse drug reaction mentions using sequence labeling with word embedding cluster features A Nikfarjam, A Sarker, K O’Connor, R Ginn, G Gonzalez Journal of the American Medical Informatics Association 22 (3), 671-681, 2015 | 557 | 2015 |
| Utilizing social media data for pharmacovigilance: A review A Sarker, R Ginn, A Nikfarjam, K O’Connor, K Smith, S Jayaraman, ... Journal of biomedical informatics 54, 202-212, 2015 | 486 | 2015 |
| Portable automatic text classification for adverse drug reaction detection via multi-corpus training A Sarker, G Gonzalez Journal of biomedical informatics 53, 196-207, 2015 | 365 | 2015 |
| Towards internet-age pharmacovigilance: extracting adverse drug reactions from user posts to health-related social networks R Leaman, L Wojtulewicz, R Sullivan, A Skariah, J Yang, G Gonzalez Proceedings of the 2010 Workshop on Biomedical Natural Language Processing …, 2010 | 354 | 2010 |
| Social media mining for toxicovigilance: automatic monitoring of prescription medication abuse from Twitter A Sarker, K O’Connor, R Ginn, M Scotch, K Smith, D Malone, G Gonzalez Drug safety 39 (3), 231-240, 2016 | 192 | 2016 |
| The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text M Krallinger, M Vazquez, F Leitner, D Salgado, A Chatr-Aryamontri, ... BMC bioinformatics 12 (8), 1-31, 2011 | 173 | 2011 |
| Recent advances and emerging applications in text and data mining for biomedical discovery GH Gonzalez, T Tahsin, BC Goodale, AC Greene, CS Greene Briefings in bioinformatics 17 (1), 33-42, 2016 | 171 | 2016 |
| Pattern mining for extraction of mentions of adverse drug reactions from user comments A Nikfarjam, GH Gonzalez AMIA Annual Symposium Proceedings 2011, 1019, 2011 | 163 | 2011 |
| Analysis of the effect of sentiment analysis on extracting adverse drug reactions from tweets and forum posts I Korkontzelos, A Nikfarjam, M Shardlow, A Sarker, S Ananiadou, ... Journal of Biomedical Informatics 62, 148-158, 2016 | 161 | 2016 |
| Pharmacovigilance on Twitter? Mining Tweets for adverse drug reactions K O’Connor, P Pimpalkhute, A Nikfarjam, R Ginn, KL Smith, G Gonzalez AMIA Annual Symposium Proceedings 2014, 924, 2014 | 152 | 2014 |
| Inter-species normalization of gene mentions with GNAT J Hakenberg, C Plake, R Leaman, M Schroeder, G Gonzalez Bioinformatics 24 (16), i126-i132, 2008 | 151 | 2008 |
| Mining Twitter for adverse drug reaction mentions: a corpus and classification benchmark R Ginn, P Pimpalkhute, A Nikfarjam, A Patki, K O’Connor, A Sarker, ... Proceedings of the fourth workshop on building and evaluating resources for …, 2014 | 147 | 2014 |
| Enhancing clinical concept extraction with distributional semantics S Jonnalagadda, T Cohen, S Wu, G Gonzalez Journal of biomedical informatics 45 (1), 129-140, 2012 | 142 | 2012 |
| Social media mining for public health monitoring and surveillance MJ Paul, A Sarker, JS Brownstein, A Nikfarjam, M Scotch, KL Smith, ... Pacific Symposium on Biocomputing (PSB), 468-79, 2016 | 137 | 2016 |
| Enabling recognition of diseases in biomedical text with machine learning: corpus and benchmark R Leaman, C Miller, G Gonzalez Proceedings of the 2009 Symposium on Languages in Biology and Medicine 82 (9 …, 2009 | 94 | 2009 |
| The GNAT library for local and remote gene mention normalization J Hakenberg, M Gerner, M Haeussler, I Solt, C Plake, M Schroeder, ... Bioinformatics 27 (19), 2769-2771, 2011 | 90 | 2011 |
| Capturing the patient’s perspective: a review of advances in natural language processing of health-related text G Gonzalez-Hernandez, A Sarker, K O’Connor, G Savova Yearbook of medical informatics 26 (01), 214-227, 2017 | 81 | 2017 |
| Mining gene-disease relationships from biomedical literature: weighting protein-protein interactions and connectivity measures G Gonzalez, JC Uribe, L Tari, C Brophy, C Baral Pac Symp Biocomput, 28-39, 2007 | 72 | 2007 |
| Towards effective sentence simplification for automatic processing of biomedical text S Jonnalagadda, L Tari, J Hakenberg, C Baral, G Gonzalez Proceedings of Human Language Technologies: The 2009 Annual Conference of …, 2009 | 71 | 2009 |
Karen O'ConnorStaff Scientist, University of PennsylvaniaVerified email at pennmedicine.upenn.edu
