Pavel P. Kuksa

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Jason WestonFacebookDirección de correo verificada de fb.com
Ronan CollobertFacebook AI ResearchDirección de correo verificada de collobert.com
koray kavukcuogluDeepMindDirección de correo verificada de kavukcuoglu.org
Leon BottouFacebook AI ResearchDirección de correo verificada de bottou.org
Li-San WangUniversity of PennsylvaniaDirección de correo verificada de upenn.edu
Yuk Yee LeungUniversity of Pennsylvania, University of Hong KongDirección de correo verificada de pennmedicine.upenn.edu
Yanjun QiAssociate Professor @CS, University of Virginia/ SCS @ Carnegie Mellon Univ./ NEC-Labs AmericaDirección de correo verificada de virginia.edu
Alexandre Amlie-WolfComputational Biologist, Arrakis TherapeuticsDirección de correo verificada de arrakistx.com
Yih-Chii HwangDNAnexusDirección de correo verificada de alumni.upenn.edu
Chiao-Feng LinSenior Bioinformatician, Partners HealthCare Personalized MedicineDirección de correo verificada de bwh.harvard.edu
Lyle UngarUniversity of PennsylvaniaDirección de correo verificada de cis.upenn.edu
Mark GersteinProfessor of Biomedical Informatics, Yale UniversityDirección de correo verificada de yale.edu
Richard P. MartinRutgers UniversityDirección de correo verificada de cs.rutgers.edu
Ian M SilvermanIncyteDirección de correo verificada de incyte.com
Shawn W FoleyGlaxoSmithKlineDirección de correo verificada de gsk.com
Imdadullah KhanLahore University of Management Science, Umm Al-Qura University, Rutgers, The State University ofDirección de correo verificada de lums.edu.pk
Christian KramerRoche BaselDirección de correo verificada de roche.com

Pavel P. Kuksa

Institute for Biomedical Informatics, University of Pennsylvania

Dirección de correo verificada de cs.rutgers.edu

Machine Learning Bioinformatics Algorithms Natural Language Processing Large-scale learning


Título Ordenar por citas Ordenar por año Ordenar por título	Citado por Citado por	Año
Natural language processing (almost) from scratch R Collobert, J Weston, L Bottou, M Karlen, K Kavukcuoglu, P Kuksa Journal of machine learning research 12 (ARTICLE), 2493− 2537, 2011	6722	2011
Systems and methods for semi-supervised relationship extraction Y Qi, B Bai, X Ning, P Kuksa US Patent 8,874,432, 2014	190	2014
Efficient alignment-free DNA barcode analytics P Kuksa, V Pavlovic BMC bioinformatics 10 (S14), S9, 2009	71	2009
DASHR: database of small human noncoding RNAs YY Leung, PP Kuksa, A Amlie-Wolf, O Valladares, LH Ungar, S Kannan, ... Nucleic acids research 44 (D1), D216-D222, 2016	59	2016
HIPPIE: a high-throughput identification pipeline for promoter interacting enhancer elements YC Hwang, CF Lin, O Valladares, J Malamon, PP Kuksa, Q Zheng, ... Bioinformatics 31 (8), 1290-1292, 2015	50	2015
Scalable algorithms for string kernels with inexact matching PP Kuksa, PH Huang, V Pavlovic Advances in neural information processing systems, 881-888, 2009	46	2009
High-order neural networks and kernel methods for peptide-MHC binding prediction PP Kuksa, MR Min, R Dugar, M Gerstein Bioinformatics 31 (22), 3600-3607, 2015	32	2015
Efficient motif finding algorithms for large-alphabet inputs PP Kuksa, V Pavlovic BMC bioinformatics 11 (S8), S1, 2010	30	2010
Chemical modifications mark alternatively spliced and uncapped messenger RNAs in Arabidopsis LE Vandivier, R Campos, PP Kuksa, IM Silverman, LS Wang, BD Gregory The Plant Cell 27 (11), 3024-3037, 2015	27	2015
A geometric approach to device-free motion localization using signal strength R Moore, R Howard, P Kuksa, RP Martin	27	2010
Semi-supervised sequence labeling with self-learned features Y Qi, P Kuksa, R Collobert, K Sadamasa, K Kavukcuoglu, J Weston 2009 Ninth IEEE International Conference on Data Mining, 428-437, 2009	27	2009
DASHR 2.0: integrated database of human small non-coding RNA genes and mature products PP Kuksa, A Amlie-Wolf, Ž Katanić, O Valladares, LS Wang, YY Leung Bioinformatics 35 (6), 1033-1039, 2019	26	2019
Spatial representation for efficient sequence classification PP Kuksa, V Pavlovic 2010 20th International Conference on Pattern Recognition, 3320-3323, 2010	24	2010
Semi-supervised bio-named entity recognition with word-codebook learning PP Kuksa, Y Qi Proceedings of the 2010 SIAM International Conference on Data Mining, 25-36, 2010	18	2010
INFERNO: inferring the molecular mechanisms of noncoding genetic variants A Amlie-Wolf, M Tang, EE Mlynarski, PP Kuksa, O Valladares, Z Katanic, ... Nucleic acids research 46 (17), 8740-8753, 2018	17	2018
Combining labeled and unlabeled data with word-class distribution learning Y Qi, R Collobert, P Kuksa, K Kavukcuoglu, J Weston Proceedings of the 18th ACM conference on Information and knowledge …, 2009	17	2009
Fast protein homology and fold detection with sparse spatial sample kernels P Kuksa, PH Huang, V Pavlovic 2008 19th International Conference on Pattern Recognition, 1-4, 2008	16	2008
Fast kernel methods for SVM sequence classifiers P Kuksa, V Pavlovic International Workshop on Algorithms in Bioinformatics, 228-239, 2007	15	2007
Efficient use of unlabeled data for protein sequence classification: a comparative study P Kuksa, PH Huang, V Pavlovic BMC bioinformatics 10 (S4), S2, 2009	14	2009
Transcriptome-wide measurement of plant RNA secondary structure SW Foley, LE Vandivier, PP Kuksa, BD Gregory Current opinion in plant biology 27, 36-43, 2015	12	2015

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