Pouya Kheradpour
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
119132012
Integrative analysis of 111 reference human epigenomes
A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ...
Nature 518 (7539), 317-330, 2015
39642015
The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans
GTEx Consortium
Science 348 (6235), 648-660, 2015
29902015
Mapping and analysis of chromatin state dynamics in nine human cell types
J Ernst, P Kheradpour, TS Mikkelsen, N Shoresh, LD Ward, CB Epstein, ...
Nature 473 (7345), 43-49, 2011
27272011
Histone modifications at human enhancers reflect global cell-type-specific gene expression
ND Heintzman, GC Hon, RD Hawkins, P Kheradpour, A Stark, LF Harp, ...
Nature 459 (7243), 108-112, 2009
23402009
Evolution of genes and genomes on the Drosophila phylogeny
Drosophila 12 Genomes Consortium
nature 450 (7167), 203, 2007
20052007
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
SG Landt, GK Marinov, A Kundaje, P Kheradpour, F Pauli, S Batzoglou, ...
Genome research 22 (9), 1813-1831, 2012
16222012
A user's guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS biol 9 (4), e1001046, 2011
12312011
A high-resolution map of human evolutionary constraint using 29 mammals
K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ...
Nature 478 (7370), 476-482, 2011
10272011
Identification of functional elements and regulatory circuits by Drosophila modENCODE
S Roy, J Ernst, PV Kharchenko, P Kheradpour, N Negre, ML Eaton, ...
Science 330 (6012), 1787-1797, 2010
8962010
Genome analysis of the platypus reveals unique signatures of evolution
WC Warren, LDW Hillier, JAM Graves, E Birney, CP Ponting, F Grützner, ...
Nature 453 (7192), 175, 2008
7192008
Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures
A Stark, MF Lin, P Kheradpour, JS Pedersen, L Parts, JW Carlson, ...
Nature 450 (7167), 219-232, 2007
6672007
A cis-regulatory map of the Drosophila genome
N Nègre, CD Brown, L Ma, CA Bristow, SW Miller, U Wagner, ...
Nature 471 (7339), 527-531, 2011
4882011
Genome-wide association study in Asian populations identifies variants in ETS1 and WDFY4 associated with systemic lupus erythematosus
W Yang, N Shen, DQ Ye, Q Liu, Y Zhang, XX Qian, N Hirankarn, D Ying, ...
PLoS Genet 6 (2), e1000841, 2010
4012010
Systematic discovery and characterization of regulatory motifs in ENCODE TF binding experiments
P Kheradpour, M Kellis
Nucleic acids research 42 (5), 2976-2987, 2014
3682014
A comprehensive map of insulator elements for the Drosophila genome
N Nègre, CD Brown, PK Shah, P Kheradpour, CA Morrison, JG Henikoff, ...
PLoS Genet 6 (1), e1000814, 2010
3082010
An epigenetic signature for monoallelic olfactory receptor expression
A Magklara, A Yen, BM Colquitt, EJ Clowney, W Allen, ...
Cell 145 (4), 555-570, 2011
2642011
A single Hox locus in Drosophila produces functional microRNAs from opposite DNA strands
A Stark, N Bushati, CH Jan, P Kheradpour, E Hodges, J Brennecke, ...
Genes & development 22 (1), 8-13, 2008
2452008
The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
EP Murchison, C Tovar, A Hsu, HS Bender, P Kheradpour, CA Rebbeck, ...
Science 327 (5961), 84-87, 2010
2282010
Systematic dissection of regulatory motifs in 2000 predicted human enhancers using a massively parallel reporter assay
P Kheradpour, J Ernst, A Melnikov, P Rogov, L Wang, X Zhang, J Alston, ...
Genome research 23 (5), 800-811, 2013
2262013
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