| A comprehensive survey of regulatory network inference methods using single cell RNA sequencing data H Nguyen, D Tran, B Tran, B Pehlivan, T Nguyen Briefings in Bioinformatics 22 (3), bbaa190, 2021 | 128 | 2021 |
| PINSPlus: a tool for tumor subtype discovery in integrated genomic data H Nguyen, S Shrestha, S Draghici, T Nguyen Bioinformatics 35 (16), 2843-2846, 2019 | 101 | 2019 |
| Fast and precise single-cell data analysis using a hierarchical autoencoder D Tran, H Nguyen, B Tran, C La Vecchia, HN Luu, T Nguyen Nature communications 12 (1), 1029, 2021 | 100 | 2021 |
| A comprehensive survey of tools and software for active subnetwork identification H Nguyen, S Shrestha, D Tran, A Shafi, S Draghici, T Nguyen Frontiers in genetics 10, 155, 2019 | 53 | 2019 |
| Functional analysis tools for post‐translational modification: a post‐translational modification database for analysis of proteins and metabolic pathways ER Cruz, H Nguyen, T Nguyen, IS Wallace The Plant Journal 99 (5), 1003-1013, 2019 | 43 | 2019 |
| A multi-cohort and multi-omics meta-analysis framework to identify network-based gene signatures A Shafi, T Nguyen, A Peyvandipour, H Nguyen, S Draghici Frontiers in genetics 10, 159, 2019 | 30 | 2019 |
| Thioesterase enzyme families: Functions, structures, and mechanisms BT Caswell, CC de Carvalho, H Nguyen, M Roy, T Nguyen, DC Cantu Protein Science 31 (3), 652-676, 2022 | 24 | 2022 |
| CPA: a web-based platform for consensus pathway analysis and interactive visualization H Nguyen, D Tran, JM Galazka, SV Costes, A Beheshti, J Petereit, ... Nucleic acids research 49 (W1), W114-W124, 2021 | 24 | 2021 |
| Multi-omics analysis detects novel prognostic subgroups of breast cancer QH Nguyen, H Nguyen, T Nguyen, DH Le Frontiers in genetics 11, 574661, 2020 | 18 | 2020 |
| A novel method for cancer subtyping and risk prediction using consensus factor analysis D Tran, H Nguyen, U Le, G Bebis, HN Luu, T Nguyen Frontiers in oncology 10, 1052, 2020 | 16 | 2020 |
| Cell‐to‐cell and type‐to‐type heterogeneity of signaling networks: insights from the crowd A Gabor, M Tognetti, A Driessen, J Tanevski, B Guo, W Cao, H Shen, T Yu, ... Molecular systems biology 17 (10), e10402, 2021 | 14 | 2021 |
| scCAN: single-cell clustering using autoencoder and network fusion B Tran, D Tran, H Nguyen, S Ro, T Nguyen Scientific Reports 12 (1), 10267, 2022 | 12 | 2022 |
| A novel method for single-cell data imputation using subspace regression D Tran, B Tran, H Nguyen, T Nguyen Scientific Reports 12 (1), 2697, 2022 | 11 | 2022 |
| RIA: a novel Regression-based Imputation Approach for single-cell RNA sequencing B Tran, D Tran, H Nguyen, NS Vo, T Nguyen 2019 11th International Conference on Knowledge and Systems Engineering (KSE …, 2019 | 9 | 2019 |
| SMRT: Randomized data transformation for cancer subtyping and big data analysis H Nguyen, D Tran, B Tran, M Roy, A Cassell, S Dascalu, S Draghici, ... Frontiers in oncology 11, 725133, 2021 | 8 | 2021 |
| A context-aware recommendation framework in e-learning environment P Do, H Nguyen, VT Nguyen, TN Dung Future Data and Security Engineering: Second International Conference, FDSE …, 2015 | 8 | 2015 |
| MGKA: A genetic algorithm-based clustering technique for genomic data H Nguyen, SJ Louis, T Nguyen 2019 IEEE Congress on Evolutionary Computation (CEC), 103-110, 2019 | 7 | 2019 |
| Quantitative proteomic analytic approaches to identify metabolic changes in the medial prefrontal cortex of rats exposed to space radiation EC Laiakis, M Pinheiro, T Nguyen, H Nguyen, A Beheshti, SM Dutta, ... Frontiers in Physiology, 1643, 2022 | 6 | 2022 |
| Mouse genomic associations with in vitro sensitivity to simulated space radiation E Cekanaviciute, D Tran, H Nguyen, AL Macha, E Pariset, S Langley, ... Life Sciences in Space Research 36, 47-58, 2023 | 4 | 2023 |
| Disease subtyping using community detection from consensus networks H Nguyen, B Tran, D Tran, QH Nguyen, DH Le, T Nguyen 2020 12th International Conference on Knowledge and Systems Engineering (KSE …, 2020 | 4 | 2020 |
