Pavel Dvořák

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Jiri DamborskyMasaryk UniversityVerified email at chemi.muni.cz
Zbynek ProkopMasaryk UniversityVerified email at chemi.muni.cz
Víctor de Lorenzo (ORCID 0000-0002-...Professor of Research of the CSICVerified email at cnb.csic.es
Jan BrezovskyLaboratory of Biomolecular Interactions and Transport, IIMCB in Warsaw and IBMIB, AMU in PoznanVerified email at iimcb.gov.pl
Pablo Iván Nikel Mayer (ORCID 0000-...Full Professor & Group Leader at The Novo Nordisk Foundation Center for BiosustainabilityVerified email at biosustain.dtu.dk
Karel SoucekInstitute of Biophysics AS CRVerified email at ibp.cz
Nagendra P KurumbangPostdoc Research Associate at University of Wisconsin-MadisonVerified email at wisc.edu
Jaroslav BendlIcahn School of Medicine at Mount Sinai, New YorkVerified email at mssm.edu
David Safranekassistant professor, Masaryk university, Faculty of informaticsVerified email at safranek.cz
Stanislav ObrucaFaculty of Chemistry, Brno University of TechnologyVerified email at fch.vut.cz
Karel SedlářDepartment of Biomedical Engineering, Brno University of TechnologyVerified email at vut.cz
Petr Dvorakprofesor molekulární biologie a genetiky, Masarykova univerzitaVerified email at muni.cz
Daniel VolkeSenior Researcher Co-PI, Technical University of DenmarkVerified email at biosustain.dtu.dk
Artur GóraBiotechnology Centre Silesian University of TechnologyVerified email at artgora.com
Petr SedláčekBrno University of Technology, Faculty of ChemistryVerified email at vutbr.cz
Martin KollerResearch Manager, Senior Researcher, Universität GrazVerified email at uni-graz.at
Esteban Martínez-GarcíaPostdoctoral ReseacherVerified email at cnb.csic.es
Huseyin TasHarvard Medical SchoolVerified email at hms.harvard.edu
Juan NogalesResearch Scientist at CSICVerified email at cnb.csic.es
Angel Goñi-MorenoTechnical University of Madrid (UPM), Spain.Verified email at upm.es

Pavel Dvořák

Associate Professor and PI at Masaryk University, Brno, Czech Republic

Verified email at sci.muni.cz - Homepage

microbiology metabolic engineering synthetic biology protein engineering systems biology


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Bioremediation 3.0: Engineering pollutant-removing bacteria in the times of systemic biology. P Dvořák, I Nikel, Pablo, J Damborský, V de Lorenzo Biotechnology Advances, 2017	308	2017
Exacerbation of substrate toxicity by IPTG in Escherichia coli BL21(DE3) carrying a synthetic metabolic pathway P Dvorak, L Chrast, PI Nikel, R Fedr, K Soucek, M Sedlackova, ... Microbial cell factories 14, 1-15, 2015	232	2015
Haloalkane dehalogenases: biotechnological applications T Koudelakova, S Bidmanova, P Dvorak, A Pavelka, R Chaloupkova, ... Biotechnology journal 8 (1), 32-45, 2013	182	2013
Pathways and mechanisms for product release in the engineered haloalkane dehalogenases explored using classical and random acceleration molecular dynamics simulations M Klvana, M Pavlova, T Koudelakova, R Chaloupkova, P Dvorak, ... Journal of molecular biology 392 (5), 1339-1356, 2009	119	2009
Refactoring the upper sugar metabolism of Pseudomonas putida for co-utilization of cellobiose, xylose, and glucose. P Dvořák, V de Lorenzo Metabolic Engineering, 2018	108	2018
Engineering a de novo transport tunnel J Brezovsky, P Babkova, O Degtjarik, A Fortova, A Gora, I Iermak, ... ACS Catalysis 6 (11), 7597-7610, 2016	102	2016
Immobilized synthetic pathway for biodegradation of toxic recalcitrant pollutant 1, 2, 3-trichloropropane P Dvorak, S Bidmanova, J Damborsky, Z Prokop Environmental science & technology 48 (12), 6859-6866, 2014	80	2014
Exploration of enzyme diversity by integrating bioinformatics with expression analysis and biochemical characterization P Vanacek, E Sebestova, P Babkova, S Bidmanova, L Daniel, P Dvorak, ... Acs Catalysis 8 (3), 2402-2412, 2018	73	2018
Polyhydroxyalkanoates synthesis by halophiles and thermophiles: towards sustainable production of microbial bioplastics S Obruča, P Dvořák, P Sedláček, M Koller, K Sedlář, I Pernicová, ... Biotechnology Advances 58, 107906, 2022	61	2022
Computer‐assisted engineering of hyperstable fibroblast growth factor 2 P Dvorak, D Bednar, P Vanacek, L Balek, L Eiselleova, V Stepankova, ... Biotechnology and bioengineering 115 (4), 850-862, 2018	59	2018
Computer-assisted engineering of the synthetic pathway for biodegradation of a toxic persistent pollutant NP Kurumbang, P Dvorak, J Bendl, J Brezovsky, Z Prokop, J Damborsky ACS synthetic biology 3 (3), 172-181, 2014	59	2014
Maximizing the efficiency of multienzyme process by stoichiometry optimization. P Dvorak, NP Kurumbang, J Bendl, J Brezovsky, Z Prokop, J Damborsky ChemBioChem 15 (13), 1891-5, 2014	37	2014
SEVA 4.0: an update of the Standard European Vector Architecture database for advanced analysis and programming of bacterial phenotypes E Martínez-García, S Fraile, E Algar, T Aparicio, E Velázquez, B Calles, ... Nucleic Acids Research 51 (D1), D1558-D1567, 2023	33	2023
Biotransformation of d‐xylose to d‐xylonate coupled to medium‐chain‐length polyhydroxyalkanoate production in cellobiose‐grown Pseudomonas putida EM42 P Dvořák, J Kováč, V de Lorenzo Microbial biotechnology 13 (4), 1273-1283, 2020	31	2020
Surface Display of Designer Protein Scaffolds on Genome-Reduced Strains of Pseudomonas putida P Dvořák, EA Bayer, V de Lorenzo ACS Synthetic Biology 9 (10), 2749–2764, 2020	22	2020
Computational Modelling of Metabolic Burden and Substrate Toxicity in Escherichia coli Carrying a Synthetic Metabolic Pathway M Demko, L Chrást, P Dvořák, J Damborský, D Šafránek Microorganisms 7 (11), 553, 2019	13	2019
Engineering of Pseudomonas putida for accelerated co-utilization of glucose and cellobiose yields aerobic overproduction of pyruvate explained by an upgraded metabolic model D Bujdoš, B Popelářová, DC Volke, PI Nikel, N Sonnenschein, P Dvořák Metabolic Engineering 75, 29-46, 2023	12	2023
An automated DIY framework for experimental evolution of Pseudomonas putida DR Espeso, P Dvořák, T Aparicio, V de Lorenzo Microbial Biotechnology 14 (6), 2679-2685, 2021	8	2021
Engineering of the synthetic metabolic pathway for biodegradation of environmental pollutant P Dvořák Ph. D. Thesis, 2014	5	2014
Building the SynBio community in the Czech Republic from the bottom up: You get what you give S Juračka, B Hrnčířová, B Burýšková, D Georgiev, P Dvořák Biotechnology Notes 3, 124-134, 2022	2	2022

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